Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1619 and GFF1620 are separated by 7 nucleotides GFF1620 and GFF1621 are separated by 56 nucleotides GFF1621 and GFF1622 are separated by 104 nucleotides GFF1622 and GFF1623 overlap by 4 nucleotides
GFF1619 - Glutathione S-transferase (EC 2.5.1.18), at 473,988 to 474,677
GFF1619
GFF1620 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 474,685 to 475,191
GFF1620
GFF1621 - tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25), at 475,248 to 476,510
GFF1621
GFF1622 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 476,615 to 477,358
GFF1622
GFF1623 - Glucoamylase (EC 3.2.1.3), at 477,355 to 479,169
GFF1623
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 474.504 kb on + strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.505 kb on - strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.537 kb on + strand, within GFF1619 at 474.538 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.571 kb on - strand, within GFF1619 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.742 kb on + strand, within GFF1620 at 474.743 kb on - strand, within GFF1620 at 474.863 kb on - strand, within GFF1620 at 474.949 kb on + strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 474.950 kb on - strand, within GFF1620 at 475.069 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.102 kb on + strand, within GFF1620 at 475.103 kb on - strand, within GFF1620 at 475.220 kb on + strand at 476.565 kb on - strand at 476.602 kb on - strand at 476.602 kb on - strand at 477.254 kb on + strand, within GFF1622
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 474,504 + GFF1619 0.75 -0.5 474,505 - GFF1619 0.75 +0.3 474,505 - GFF1619 0.75 +1.3 474,537 + GFF1619 0.80 +0.3 474,537 + GFF1619 0.80 -1.4 474,537 + GFF1619 0.80 -0.3 474,538 - GFF1619 0.80 +0.0 474,571 - GFF1619 0.84 +1.7 474,571 - GFF1619 0.84 -0.3 474,742 + GFF1620 0.11 -0.7 474,742 + GFF1620 0.11 -0.1 474,742 + GFF1620 0.11 -0.5 474,742 + GFF1620 0.11 -1.5 474,742 + GFF1620 0.11 +1.1 474,742 + GFF1620 0.11 +0.5 474,742 + GFF1620 0.11 +0.8 474,743 - GFF1620 0.11 +1.7 474,863 - GFF1620 0.35 +0.7 474,949 + GFF1620 0.52 -1.5 474,950 - GFF1620 0.52 -0.4 474,950 - GFF1620 0.52 +0.4 475,069 + GFF1620 0.76 -0.1 475,102 + GFF1620 0.82 -0.8 475,102 + GFF1620 0.82 +0.1 475,103 - GFF1620 0.82 -0.6 475,220 + -0.3 476,565 - -0.2 476,602 - +0.1 476,602 - -1.9 477,254 + GFF1622 0.86 +0.2
Or see this region's nucleotide sequence