Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1583 and GFF1584 are separated by 149 nucleotides GFF1584 and GFF1585 are separated by 24 nucleotides GFF1585 and GFF1586 are separated by 17 nucleotides
GFF1583 - Nodulation protein D (transcriptional regulator, LysR family), at 439,211 to 440,122
GFF1583
GFF1584 - Transcriptional regulator, AraC family, at 440,272 to 441,270
GFF1584
GFF1585 - Alkanesulfonates transport system permease protein, at 441,295 to 442,044
GFF1585
GFF1586 - Alkanesulfonates transport system permease protein, at 442,062 to 442,826
GFF1586
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 439.285 kb on - strand at 439.420 kb on - strand, within GFF1583 at 439.717 kb on - strand, within GFF1583 at 439.717 kb on - strand, within GFF1583 at 439.806 kb on + strand, within GFF1583 at 440.179 kb on + strand at 440.180 kb on - strand at 440.180 kb on - strand at 440.212 kb on + strand at 440.641 kb on + strand, within GFF1584 at 440.641 kb on + strand, within GFF1584 at 440.641 kb on + strand, within GFF1584 at 440.641 kb on + strand, within GFF1584 at 440.642 kb on - strand, within GFF1584 at 440.677 kb on + strand, within GFF1584 at 440.678 kb on - strand, within GFF1584 at 440.678 kb on - strand, within GFF1584 at 440.678 kb on - strand, within GFF1584 at 441.395 kb on + strand, within GFF1585 at 441.396 kb on - strand, within GFF1585 at 442.174 kb on + strand, within GFF1586 at 442.174 kb on + strand, within GFF1586 at 442.174 kb on + strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586 at 442.175 kb on - strand, within GFF1586
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 439,285 - -0.7 439,420 - GFF1583 0.23 -0.3 439,717 - GFF1583 0.55 -0.1 439,717 - GFF1583 0.55 -0.2 439,806 + GFF1583 0.65 +0.1 440,179 + +0.8 440,180 - -0.7 440,180 - -0.0 440,212 + -0.9 440,641 + GFF1584 0.37 -0.2 440,641 + GFF1584 0.37 -0.4 440,641 + GFF1584 0.37 +0.2 440,641 + GFF1584 0.37 -0.5 440,642 - GFF1584 0.37 +0.4 440,677 + GFF1584 0.41 -1.8 440,678 - GFF1584 0.41 +0.2 440,678 - GFF1584 0.41 +0.1 440,678 - GFF1584 0.41 +1.3 441,395 + GFF1585 0.13 +0.2 441,396 - GFF1585 0.13 +1.1 442,174 + GFF1586 0.15 +2.9 442,174 + GFF1586 0.15 -0.7 442,174 + GFF1586 0.15 +0.5 442,175 - GFF1586 0.15 +0.1 442,175 - GFF1586 0.15 -0.3 442,175 - GFF1586 0.15 +0.1 442,175 - GFF1586 0.15 -0.3 442,175 - GFF1586 0.15 +0.1
Or see this region's nucleotide sequence