Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1388 and GFF1389 overlap by 4 nucleotides GFF1389 and GFF1390 are separated by 45 nucleotides GFF1390 and GFF1391 are separated by 10 nucleotides
GFF1388 - General secretion pathway protein M, at 242,527 to 243,060
GFF1388
GFF1389 - General secretion pathway protein N, at 243,057 to 243,854
GFF1389
GFF1390 - General secretion pathway protein D, at 243,900 to 246,104
GFF1390
GFF1391 - General secretion pathway protein E, at 246,115 to 247,557
GFF1391
Position (kb) 243
244
245
246
247 Strain fitness (log2 ratio) -2
-1
0
1 at 243.630 kb on + strand, within GFF1389 at 243.631 kb on - strand, within GFF1389 at 243.888 kb on + strand at 243.888 kb on + strand at 243.889 kb on - strand at 243.889 kb on - strand at 243.889 kb on - strand at 243.889 kb on - strand at 244.249 kb on - strand, within GFF1390 at 244.249 kb on - strand, within GFF1390 at 244.249 kb on - strand, within GFF1390 at 244.465 kb on - strand, within GFF1390 at 244.635 kb on + strand, within GFF1390 at 244.635 kb on + strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.782 kb on + strand, within GFF1390 at 244.783 kb on - strand, within GFF1390 at 245.112 kb on + strand, within GFF1390 at 245.112 kb on + strand, within GFF1390 at 245.113 kb on - strand, within GFF1390 at 245.113 kb on - strand, within GFF1390 at 245.113 kb on - strand, within GFF1390 at 245.113 kb on - strand, within GFF1390 at 245.113 kb on - strand, within GFF1390 at 245.328 kb on + strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.599 kb on - strand, within GFF1390 at 245.599 kb on - strand, within GFF1390 at 245.736 kb on + strand, within GFF1390 at 245.737 kb on - strand, within GFF1390 at 245.737 kb on - strand, within GFF1390 at 245.901 kb on + strand at 246.121 kb on + strand at 246.122 kb on - strand at 246.133 kb on + strand at 246.133 kb on + strand at 246.133 kb on + strand at 246.334 kb on + strand, within GFF1391 at 246.335 kb on - strand, within GFF1391 at 246.532 kb on + strand, within GFF1391
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 243,630 + GFF1389 0.72 +1.4 243,631 - GFF1389 0.72 +1.1 243,888 + -0.1 243,888 + +1.6 243,889 - -0.3 243,889 - -2.0 243,889 - -0.2 243,889 - -0.4 244,249 - GFF1390 0.16 -0.1 244,249 - GFF1390 0.16 +1.7 244,249 - GFF1390 0.16 +0.1 244,465 - GFF1390 0.26 -1.3 244,635 + GFF1390 0.33 -0.1 244,635 + GFF1390 0.33 +0.5 244,636 - GFF1390 0.33 +0.1 244,636 - GFF1390 0.33 +0.4 244,636 - GFF1390 0.33 -0.4 244,636 - GFF1390 0.33 -0.1 244,636 - GFF1390 0.33 -0.5 244,782 + GFF1390 0.40 -0.7 244,783 - GFF1390 0.40 +1.1 245,112 + GFF1390 0.55 -0.6 245,112 + GFF1390 0.55 +0.1 245,113 - GFF1390 0.55 +0.3 245,113 - GFF1390 0.55 -0.2 245,113 - GFF1390 0.55 +0.5 245,113 - GFF1390 0.55 -0.1 245,113 - GFF1390 0.55 +0.7 245,328 + GFF1390 0.65 -0.6 245,329 - GFF1390 0.65 -0.0 245,329 - GFF1390 0.65 -0.5 245,329 - GFF1390 0.65 -0.3 245,329 - GFF1390 0.65 -0.7 245,329 - GFF1390 0.65 +0.5 245,598 + GFF1390 0.77 -0.3 245,598 + GFF1390 0.77 +0.2 245,598 + GFF1390 0.77 -0.9 245,599 - GFF1390 0.77 -0.3 245,599 - GFF1390 0.77 -0.4 245,736 + GFF1390 0.83 -1.2 245,737 - GFF1390 0.83 -1.4 245,737 - GFF1390 0.83 -0.0 245,901 + +0.3 246,121 + +0.0 246,122 - -0.0 246,133 + -1.7 246,133 + -1.6 246,133 + +0.1 246,334 + GFF1391 0.15 +0.0 246,335 - GFF1391 0.15 -0.3 246,532 + GFF1391 0.29 -1.0
Or see this region's nucleotide sequence