Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1202

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1201 and GFF1202 are separated by 133 nucleotidesGFF1202 and GFF1203 are separated by 34 nucleotides GFF1201 - Benzoyl-CoA oxygenase component A, at 61,228 to 62,529 GFF1201 GFF1202 - Benzoyl-CoA oxygenase component B, at 62,663 to 64,090 GFF1202 GFF1203 - Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44), at 64,125 to 65,792 GFF1203 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 61.698 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.751 kb on + strand, within GFF1201at 61.752 kb on - strand, within GFF1201at 61.752 kb on - strand, within GFF1201at 61.752 kb on - strand, within GFF1201at 61.752 kb on - strand, within GFF1201at 61.752 kb on - strand, within GFF1201at 61.794 kb on - strand, within GFF1201at 61.868 kb on + strand, within GFF1201at 61.992 kb on - strand, within GFF1201at 62.082 kb on - strand, within GFF1201at 62.082 kb on - strand, within GFF1201at 62.082 kb on - strand, within GFF1201at 62.094 kb on - strand, within GFF1201at 62.094 kb on - strand, within GFF1201at 62.094 kb on - strand, within GFF1201at 62.094 kb on - strand, within GFF1201at 62.094 kb on - strand, within GFF1201at 62.405 kb on + strandat 62.405 kb on + strandat 62.405 kb on + strandat 62.405 kb on + strandat 62.406 kb on - strandat 62.406 kb on - strandat 62.406 kb on - strandat 62.406 kb on - strandat 62.549 kb on + strandat 62.550 kb on - strandat 62.550 kb on - strandat 62.560 kb on + strandat 62.561 kb on - strandat 62.675 kb on + strandat 62.675 kb on + strandat 62.675 kb on + strandat 62.676 kb on - strandat 62.679 kb on + strandat 62.679 kb on + strandat 62.679 kb on + strandat 63.081 kb on + strand, within GFF1202at 63.081 kb on + strand, within GFF1202at 63.081 kb on + strand, within GFF1202at 63.081 kb on + strand, within GFF1202at 63.081 kb on + strand, within GFF1202at 63.082 kb on - strand, within GFF1202at 63.153 kb on + strand, within GFF1202at 63.153 kb on + strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.211 kb on - strand, within GFF1202at 63.462 kb on + strand, within GFF1202at 63.462 kb on + strand, within GFF1202at 63.463 kb on - strand, within GFF1202at 63.463 kb on - strand, within GFF1202at 63.609 kb on + strand, within GFF1202at 63.609 kb on + strand, within GFF1202at 63.610 kb on - strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.939 kb on + strand, within GFF1202at 64.074 kb on + strandat 64.075 kb on - strandat 64.075 kb on - strandat 64.168 kb on + strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 65.002 kb on + strand, within GFF1203at 65.002 kb on + strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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61,698 + GFF1201 0.36 -0.0
61,751 + GFF1201 0.40 -0.0
61,751 + GFF1201 0.40 +0.9
61,751 + GFF1201 0.40 +0.8
61,751 + GFF1201 0.40 -0.9
61,751 + GFF1201 0.40 -0.0
61,751 + GFF1201 0.40 +0.3
61,751 + GFF1201 0.40 -0.4
61,751 + GFF1201 0.40 +0.3
61,752 - GFF1201 0.40 -0.1
61,752 - GFF1201 0.40 +0.4
61,752 - GFF1201 0.40 -0.2
61,752 - GFF1201 0.40 -0.6
61,752 - GFF1201 0.40 +0.5
61,794 - GFF1201 0.43 +0.3
61,868 + GFF1201 0.49 -0.3
61,992 - GFF1201 0.59 -0.1
62,082 - GFF1201 0.66 -0.1
62,082 - GFF1201 0.66 -0.7
62,082 - GFF1201 0.66 -0.0
62,094 - GFF1201 0.67 -1.3
62,094 - GFF1201 0.67 -0.3
62,094 - GFF1201 0.67 -0.9
62,094 - GFF1201 0.67 -1.3
62,094 - GFF1201 0.67 +0.4
62,405 + +0.5
62,405 + -0.3
62,405 + +0.6
62,405 + +0.3
62,406 - -0.2
62,406 - +0.7
62,406 - +0.9
62,406 - -0.1
62,549 + -0.3
62,550 - -0.8
62,550 - -0.2
62,560 + +0.3
62,561 - -0.1
62,675 + -0.2
62,675 + -0.5
62,675 + +0.3
62,676 - +0.2
62,679 + -0.4
62,679 + +0.0
62,679 + +0.4
63,081 + GFF1202 0.29 +0.1
63,081 + GFF1202 0.29 +1.3
63,081 + GFF1202 0.29 -1.3
63,081 + GFF1202 0.29 +0.5
63,081 + GFF1202 0.29 +0.8
63,082 - GFF1202 0.29 -0.2
63,153 + GFF1202 0.34 +0.6
63,153 + GFF1202 0.34 +0.8
63,154 - GFF1202 0.34 -0.2
63,154 - GFF1202 0.34 -0.5
63,154 - GFF1202 0.34 +0.1
63,154 - GFF1202 0.34 +2.7
63,211 - GFF1202 0.38 +1.9
63,462 + GFF1202 0.56 +0.6
63,462 + GFF1202 0.56 +2.3
63,463 - GFF1202 0.56 -0.3
63,463 - GFF1202 0.56 -0.1
63,609 + GFF1202 0.66 -0.9
63,609 + GFF1202 0.66 +1.7
63,610 - GFF1202 0.66 +1.0
63,672 + GFF1202 0.71 +0.6
63,672 + GFF1202 0.71 -0.5
63,672 + GFF1202 0.71 -0.3
63,672 + GFF1202 0.71 +1.1
63,672 + GFF1202 0.71 -0.1
63,673 - GFF1202 0.71 +0.3
63,673 - GFF1202 0.71 +0.3
63,673 - GFF1202 0.71 -0.5
63,673 - GFF1202 0.71 -0.3
63,673 - GFF1202 0.71 +1.1
63,673 - GFF1202 0.71 +1.5
63,939 + GFF1202 0.89 -0.2
64,074 + +0.7
64,075 - -0.5
64,075 - +0.7
64,168 + +0.7
64,169 - +0.1
64,169 - -0.1
64,169 - -0.2
64,169 - -0.3
64,169 - -0.9
64,588 + GFF1203 0.28 +0.4
64,588 + GFF1203 0.28 -0.1
64,588 + GFF1203 0.28 +0.6
64,588 + GFF1203 0.28 -0.8
64,589 - GFF1203 0.28 -0.5
64,589 - GFF1203 0.28 +0.5
64,589 - GFF1203 0.28 -0.5
64,996 + GFF1203 0.52 +0.7
64,996 + GFF1203 0.52 +0.3
64,996 + GFF1203 0.52 -0.1
64,996 + GFF1203 0.52 +0.6
64,996 + GFF1203 0.52 -0.4
64,996 + GFF1203 0.52 -0.2
64,996 + GFF1203 0.52 -2.0
64,997 - GFF1203 0.52 +1.3
64,997 - GFF1203 0.52 -0.9
64,997 - GFF1203 0.52 +1.7
65,002 + GFF1203 0.53 -0.1
65,002 + GFF1203 0.53 +0.3
65,003 - GFF1203 0.53 +2.4
65,003 - GFF1203 0.53 -0.9
65,003 - GFF1203 0.53 -1.5
65,003 - GFF1203 0.53 -0.2

Or see this region's nucleotide sequence