Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1053 and GFF1054 overlap by 4 nucleotides
GFF1053 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 790,344 to 791,372
GFF1053
GFF1054 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 791,369 to 792,934
GFF1054
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.374 kb on + strand at 790.374 kb on + strand at 790.701 kb on - strand, within GFF1053 at 790.932 kb on - strand, within GFF1053 at 791.005 kb on - strand, within GFF1053 at 791.005 kb on - strand, within GFF1053 at 791.363 kb on + strand at 791.364 kb on - strand at 791.454 kb on - strand at 791.535 kb on - strand, within GFF1054 at 791.537 kb on - strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.612 kb on + strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.613 kb on - strand, within GFF1054 at 791.624 kb on + strand, within GFF1054 at 791.625 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.192 kb on - strand, within GFF1054 at 792.263 kb on + strand, within GFF1054 at 792.264 kb on - strand, within GFF1054 at 792.328 kb on + strand, within GFF1054 at 792.328 kb on + strand, within GFF1054 at 792.406 kb on + strand, within GFF1054 at 792.414 kb on + strand, within GFF1054 at 792.415 kb on - strand, within GFF1054 at 792.622 kb on - strand, within GFF1054 at 792.622 kb on - strand, within GFF1054 at 792.622 kb on - strand, within GFF1054 at 792.622 kb on - strand, within GFF1054 at 793.082 kb on + strand at 793.082 kb on + strand at 793.083 kb on - strand at 793.083 kb on - strand at 793.083 kb on - strand at 793.083 kb on - strand at 793.083 kb on - strand at 793.091 kb on + strand at 793.232 kb on - strand at 793.232 kb on - strand at 793.239 kb on + strand at 793.240 kb on - strand at 793.240 kb on - strand at 793.240 kb on - strand at 793.241 kb on + strand at 793.241 kb on + strand at 793.241 kb on + strand at 793.242 kb on - strand at 793.242 kb on - strand at 793.242 kb on - strand at 793.242 kb on - strand at 793.242 kb on - strand at 793.242 kb on - strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.243 kb on + strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.244 kb on - strand at 793.273 kb on + strand at 793.273 kb on + strand at 793.273 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.454 kb on + strand at 793.454 kb on + strand at 793.528 kb on - strand at 793.535 kb on - strand at 793.603 kb on + strand at 793.603 kb on + strand at 793.604 kb on - strand at 793.604 kb on - strand at 793.604 kb on - strand at 793.667 kb on + strand at 793.667 kb on + strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.747 kb on + strand at 793.748 kb on - strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 790,374 + -0.5 790,374 + +0.1 790,701 - GFF1053 0.35 +0.8 790,932 - GFF1053 0.57 -0.4 791,005 - GFF1053 0.64 +0.5 791,005 - GFF1053 0.64 +0.3 791,363 + -0.2 791,364 - -0.6 791,454 - -0.3 791,535 - GFF1054 0.11 -0.0 791,537 - GFF1054 0.11 +0.4 791,612 + GFF1054 0.16 -0.5 791,612 + GFF1054 0.16 -0.5 791,612 + GFF1054 0.16 -0.5 791,612 + GFF1054 0.16 +1.7 791,612 + GFF1054 0.16 +1.1 791,613 - GFF1054 0.16 +0.5 791,613 - GFF1054 0.16 +0.5 791,613 - GFF1054 0.16 +0.1 791,613 - GFF1054 0.16 +2.4 791,613 - GFF1054 0.16 -0.2 791,624 + GFF1054 0.16 -1.9 791,625 - GFF1054 0.16 -1.3 792,192 - GFF1054 0.53 +0.0 792,192 - GFF1054 0.53 +0.4 792,192 - GFF1054 0.53 -0.3 792,192 - GFF1054 0.53 -0.0 792,263 + GFF1054 0.57 -0.2 792,264 - GFF1054 0.57 -0.4 792,328 + GFF1054 0.61 -0.1 792,328 + GFF1054 0.61 -0.0 792,406 + GFF1054 0.66 +1.7 792,414 + GFF1054 0.67 +0.6 792,415 - GFF1054 0.67 +1.2 792,622 - GFF1054 0.80 -0.5 792,622 - GFF1054 0.80 -0.0 792,622 - GFF1054 0.80 +0.1 792,622 - GFF1054 0.80 -1.3 793,082 + -0.9 793,082 + -0.8 793,083 - -1.5 793,083 - +0.1 793,083 - +0.8 793,083 - -0.1 793,083 - -0.9 793,091 + +0.1 793,232 - +1.6 793,232 - +0.1 793,239 + +0.7 793,240 - +1.1 793,240 - -1.0 793,240 - -0.9 793,241 + -0.2 793,241 + +0.2 793,241 + +0.4 793,242 - +0.3 793,242 - +0.0 793,242 - +1.3 793,242 - +0.0 793,242 - +0.2 793,242 - -1.3 793,243 + -0.1 793,243 + +0.3 793,243 + -0.4 793,243 + +0.3 793,243 + -0.1 793,243 + +0.9 793,243 + +0.3 793,243 + +0.2 793,244 - +0.7 793,244 - +1.9 793,244 - -0.4 793,244 - -0.0 793,244 - -0.0 793,244 - +0.1 793,244 - +0.5 793,244 - +2.1 793,244 - -0.5 793,244 - +0.3 793,244 - +0.1 793,244 - +0.1 793,244 - -0.4 793,273 + -0.0 793,273 + -0.0 793,273 + +0.3 793,399 + -0.7 793,399 + +0.3 793,399 + +0.9 793,399 + -0.8 793,399 + -0.2 793,399 + -0.3 793,399 + +0.3 793,399 + -0.3 793,400 - -0.2 793,400 - -0.1 793,400 - -0.4 793,400 - +0.7 793,400 - -0.3 793,400 - -0.3 793,400 - +0.1 793,454 + -1.8 793,454 + -1.7 793,528 - -0.5 793,535 - +0.5 793,603 + -0.3 793,603 + -1.4 793,604 - +0.7 793,604 - +0.2 793,604 - +0.4 793,667 + +0.5 793,667 + -0.3 793,668 - +0.5 793,668 - +0.1 793,668 - +0.3 793,668 - -0.9 793,668 - -0.2 793,706 + +0.0 793,706 + +1.1 793,706 + +1.1 793,706 + -2.8 793,706 + +0.2 793,706 + -0.1 793,706 + +0.1 793,706 + +1.1 793,707 - +0.7 793,707 - -0.2 793,707 - +0.1 793,707 - +0.4 793,707 - +1.1 793,707 - +0.4 793,707 - +0.1 793,707 - +1.3 793,747 + -0.7 793,748 - +0.4 793,831 + +0.3 793,831 + +0.1 793,831 + -0.9 793,831 + +0.2 793,832 - -0.4
Or see this region's nucleotide sequence