Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1038 and GFF1039 are separated by 348 nucleotides GFF1039 and GFF1040 are separated by 182 nucleotides GFF1040 and GFF1041 are separated by 372 nucleotides
GFF1038 - NADPH:quinone oxidoreductase, at 777,221 to 777,793
GFF1038
GFF1039 - putative membrane protein, at 778,142 to 778,567
GFF1039
GFF1040 - Transcriptional regulator, HxlR family, at 778,750 to 779,055
GFF1040
GFF1041 - Aerotaxis sensor receptor protein, at 779,428 to 780,972
GFF1041
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 777.783 kb on + strand at 777.783 kb on + strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.784 kb on - strand at 777.994 kb on - strand at 778.081 kb on + strand at 778.082 kb on - strand at 778.093 kb on - strand at 778.282 kb on - strand, within GFF1039 at 778.291 kb on - strand, within GFF1039 at 778.441 kb on + strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.442 kb on - strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.443 kb on + strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.444 kb on - strand, within GFF1039 at 778.617 kb on - strand at 778.617 kb on - strand at 778.622 kb on - strand at 778.665 kb on + strand at 778.665 kb on + strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.666 kb on - strand at 778.707 kb on - strand at 778.787 kb on - strand, within GFF1040 at 778.787 kb on - strand, within GFF1040 at 778.901 kb on - strand, within GFF1040 at 778.902 kb on - strand, within GFF1040 at 778.921 kb on + strand, within GFF1040 at 778.921 kb on + strand, within GFF1040 at 778.921 kb on + strand, within GFF1040 at 778.960 kb on + strand, within GFF1040 at 779.144 kb on + strand at 779.144 kb on + strand at 779.144 kb on + strand at 779.144 kb on + strand at 779.145 kb on - strand at 779.145 kb on - strand at 779.145 kb on - strand at 779.145 kb on - strand at 779.145 kb on - strand at 779.145 kb on - strand at 779.182 kb on + strand at 779.198 kb on + strand at 779.198 kb on + strand at 779.198 kb on + strand at 779.199 kb on - strand at 779.257 kb on - strand at 779.422 kb on + strand at 779.423 kb on - strand at 779.514 kb on + strand at 779.515 kb on - strand at 779.521 kb on + strand at 779.522 kb on - strand at 779.704 kb on + strand, within GFF1041 at 779.759 kb on - strand, within GFF1041 at 779.816 kb on - strand, within GFF1041
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 777,783 + -1.4 777,783 + +0.9 777,784 - -1.7 777,784 - -1.1 777,784 - +0.4 777,784 - +0.1 777,784 - -1.1 777,994 - -2.3 778,081 + +1.1 778,082 - +1.6 778,093 - +1.1 778,282 - GFF1039 0.33 -0.1 778,291 - GFF1039 0.35 -0.7 778,441 + GFF1039 0.70 +0.5 778,442 - GFF1039 0.70 +2.4 778,442 - GFF1039 0.70 -1.7 778,442 - GFF1039 0.70 +0.1 778,442 - GFF1039 0.70 -0.3 778,443 + GFF1039 0.71 +0.1 778,443 + GFF1039 0.71 -0.1 778,443 + GFF1039 0.71 +0.3 778,443 + GFF1039 0.71 -0.4 778,443 + GFF1039 0.71 -0.1 778,444 - GFF1039 0.71 -0.2 778,444 - GFF1039 0.71 +0.2 778,444 - GFF1039 0.71 -0.3 778,444 - GFF1039 0.71 -0.3 778,444 - GFF1039 0.71 -0.2 778,617 - +0.7 778,617 - -0.1 778,622 - -0.1 778,665 + +0.3 778,665 + -1.0 778,666 - +0.3 778,666 - -0.3 778,666 - -0.1 778,707 - -0.2 778,787 - GFF1040 0.12 +0.7 778,787 - GFF1040 0.12 -1.3 778,901 - GFF1040 0.49 +0.5 778,902 - GFF1040 0.50 +1.1 778,921 + GFF1040 0.56 +1.5 778,921 + GFF1040 0.56 -0.7 778,921 + GFF1040 0.56 +0.2 778,960 + GFF1040 0.69 -0.5 779,144 + -0.4 779,144 + -0.3 779,144 + +0.5 779,144 + +0.1 779,145 - -0.5 779,145 - +1.6 779,145 - -0.3 779,145 - -1.7 779,145 - -0.1 779,145 - +0.1 779,182 + -1.3 779,198 + -0.2 779,198 + -0.6 779,198 + +0.1 779,199 - -0.6 779,257 - +0.9 779,422 + +0.3 779,423 - -0.5 779,514 + +0.0 779,515 - -0.7 779,521 + +0.1 779,522 - +0.1 779,704 + GFF1041 0.18 -0.5 779,759 - GFF1041 0.21 +1.4 779,816 - GFF1041 0.25 +0.3
Or see this region's nucleotide sequence