Experiment: RCM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04565 and HMPREF1181_RS04570 are separated by 104 nucleotides HMPREF1181_RS04570 and HMPREF1181_RS04575 are separated by 35 nucleotides
HMPREF1181_RS04565: HMPREF1181_RS04565 - diphosphate--fructose-6-phosphate 1-phosphotransferase, at 154,463 to 156,109
_RS04565
HMPREF1181_RS04570: HMPREF1181_RS04570 - efflux transporter outer membrane subunit, at 156,214 to 157,593
_RS04570
HMPREF1181_RS04575: HMPREF1181_RS04575 - multidrug efflux RND transporter permease subunit, at 157,629 to 160,739
_RS04575
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.216 kb on - strand at 156.250 kb on - strand at 156.251 kb on + strand at 156.348 kb on - strand at 156.352 kb on - strand, within HMPREF1181_RS04570 at 156.352 kb on - strand, within HMPREF1181_RS04570 at 156.355 kb on - strand, within HMPREF1181_RS04570 at 156.367 kb on - strand, within HMPREF1181_RS04570 at 156.368 kb on + strand, within HMPREF1181_RS04570 at 156.368 kb on + strand, within HMPREF1181_RS04570 at 156.382 kb on + strand, within HMPREF1181_RS04570 at 156.471 kb on + strand, within HMPREF1181_RS04570 at 156.687 kb on + strand, within HMPREF1181_RS04570 at 156.687 kb on + strand, within HMPREF1181_RS04570 at 156.688 kb on - strand, within HMPREF1181_RS04570 at 156.726 kb on + strand, within HMPREF1181_RS04570 at 156.727 kb on - strand, within HMPREF1181_RS04570 at 156.727 kb on - strand, within HMPREF1181_RS04570 at 156.727 kb on - strand, within HMPREF1181_RS04570 at 156.793 kb on + strand, within HMPREF1181_RS04570 at 156.847 kb on - strand, within HMPREF1181_RS04570 at 156.871 kb on + strand, within HMPREF1181_RS04570 at 156.871 kb on + strand, within HMPREF1181_RS04570 at 156.940 kb on + strand, within HMPREF1181_RS04570 at 156.957 kb on - strand, within HMPREF1181_RS04570 at 156.957 kb on - strand, within HMPREF1181_RS04570 at 157.133 kb on - strand, within HMPREF1181_RS04570 at 157.154 kb on - strand, within HMPREF1181_RS04570 at 157.259 kb on + strand, within HMPREF1181_RS04570 at 157.309 kb on + strand, within HMPREF1181_RS04570 at 157.315 kb on - strand, within HMPREF1181_RS04570 at 157.318 kb on + strand, within HMPREF1181_RS04570 at 157.319 kb on - strand, within HMPREF1181_RS04570 at 157.375 kb on - strand, within HMPREF1181_RS04570 at 157.375 kb on - strand, within HMPREF1181_RS04570 at 157.386 kb on - strand, within HMPREF1181_RS04570 at 157.419 kb on + strand, within HMPREF1181_RS04570 at 157.419 kb on + strand, within HMPREF1181_RS04570 at 157.429 kb on - strand, within HMPREF1181_RS04570 at 157.518 kb on - strand at 157.543 kb on + strand at 157.570 kb on + strand at 157.570 kb on + strand at 157.571 kb on - strand at 157.572 kb on + strand at 157.572 kb on + strand at 157.574 kb on + strand at 157.574 kb on + strand at 157.577 kb on - strand at 157.578 kb on + strand at 157.625 kb on - strand at 157.838 kb on + strand at 157.838 kb on + strand at 158.005 kb on - strand, within HMPREF1181_RS04575 at 158.020 kb on + strand, within HMPREF1181_RS04575 at 158.020 kb on + strand, within HMPREF1181_RS04575 at 158.064 kb on - strand, within HMPREF1181_RS04575 at 158.107 kb on - strand, within HMPREF1181_RS04575 at 158.119 kb on - strand, within HMPREF1181_RS04575 at 158.194 kb on - strand, within HMPREF1181_RS04575 at 158.194 kb on - strand, within HMPREF1181_RS04575 at 158.194 kb on - strand, within HMPREF1181_RS04575 at 158.195 kb on + strand, within HMPREF1181_RS04575 at 158.292 kb on - strand, within HMPREF1181_RS04575 at 158.334 kb on - strand, within HMPREF1181_RS04575 at 158.335 kb on + strand, within HMPREF1181_RS04575 at 158.379 kb on - strand, within HMPREF1181_RS04575 at 158.389 kb on - strand, within HMPREF1181_RS04575 at 158.454 kb on - strand, within HMPREF1181_RS04575 at 158.455 kb on + strand, within HMPREF1181_RS04575 at 158.455 kb on + strand, within HMPREF1181_RS04575 at 158.459 kb on + strand, within HMPREF1181_RS04575 at 158.489 kb on - strand, within HMPREF1181_RS04575 at 158.490 kb on + strand, within HMPREF1181_RS04575 at 158.491 kb on - strand, within HMPREF1181_RS04575 at 158.501 kb on + strand, within HMPREF1181_RS04575 at 158.501 kb on + strand, within HMPREF1181_RS04575 at 158.579 kb on - strand, within HMPREF1181_RS04575
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media remove 156,216 - +1.9 156,250 - -0.0 156,251 + +0.1 156,348 - +0.7 156,352 - HMPREF1181_RS04570 0.10 +0.1 156,352 - HMPREF1181_RS04570 0.10 +0.1 156,355 - HMPREF1181_RS04570 0.10 +0.1 156,367 - HMPREF1181_RS04570 0.11 +0.3 156,368 + HMPREF1181_RS04570 0.11 +0.5 156,368 + HMPREF1181_RS04570 0.11 -0.8 156,382 + HMPREF1181_RS04570 0.12 +0.2 156,471 + HMPREF1181_RS04570 0.19 -0.0 156,687 + HMPREF1181_RS04570 0.34 +0.2 156,687 + HMPREF1181_RS04570 0.34 +0.1 156,688 - HMPREF1181_RS04570 0.34 -0.5 156,726 + HMPREF1181_RS04570 0.37 +1.0 156,727 - HMPREF1181_RS04570 0.37 +1.1 156,727 - HMPREF1181_RS04570 0.37 +0.3 156,727 - HMPREF1181_RS04570 0.37 -0.4 156,793 + HMPREF1181_RS04570 0.42 +0.3 156,847 - HMPREF1181_RS04570 0.46 -0.7 156,871 + HMPREF1181_RS04570 0.48 -0.1 156,871 + HMPREF1181_RS04570 0.48 +0.0 156,940 + HMPREF1181_RS04570 0.53 -0.3 156,957 - HMPREF1181_RS04570 0.54 +0.3 156,957 - HMPREF1181_RS04570 0.54 -0.0 157,133 - HMPREF1181_RS04570 0.67 -1.2 157,154 - HMPREF1181_RS04570 0.68 -0.4 157,259 + HMPREF1181_RS04570 0.76 +0.9 157,309 + HMPREF1181_RS04570 0.79 -2.1 157,315 - HMPREF1181_RS04570 0.80 +0.1 157,318 + HMPREF1181_RS04570 0.80 +0.1 157,319 - HMPREF1181_RS04570 0.80 -0.7 157,375 - HMPREF1181_RS04570 0.84 -0.5 157,375 - HMPREF1181_RS04570 0.84 -0.0 157,386 - HMPREF1181_RS04570 0.85 -0.8 157,419 + HMPREF1181_RS04570 0.87 -0.3 157,419 + HMPREF1181_RS04570 0.87 -0.4 157,429 - HMPREF1181_RS04570 0.88 -0.2 157,518 - +0.0 157,543 + -0.1 157,570 + +0.0 157,570 + -0.5 157,571 - +0.1 157,572 + +0.1 157,572 + -0.1 157,574 + +0.3 157,574 + -0.5 157,577 - -1.2 157,578 + +0.3 157,625 - +0.2 157,838 + -1.9 157,838 + -0.4 158,005 - HMPREF1181_RS04575 0.12 +0.4 158,020 + HMPREF1181_RS04575 0.13 -0.4 158,020 + HMPREF1181_RS04575 0.13 -0.2 158,064 - HMPREF1181_RS04575 0.14 -0.7 158,107 - HMPREF1181_RS04575 0.15 +0.1 158,119 - HMPREF1181_RS04575 0.16 -0.2 158,194 - HMPREF1181_RS04575 0.18 -0.2 158,194 - HMPREF1181_RS04575 0.18 +0.1 158,194 - HMPREF1181_RS04575 0.18 +0.5 158,195 + HMPREF1181_RS04575 0.18 +0.3 158,292 - HMPREF1181_RS04575 0.21 +0.0 158,334 - HMPREF1181_RS04575 0.23 +0.5 158,335 + HMPREF1181_RS04575 0.23 -0.5 158,379 - HMPREF1181_RS04575 0.24 +0.2 158,389 - HMPREF1181_RS04575 0.24 -0.2 158,454 - HMPREF1181_RS04575 0.27 +0.1 158,455 + HMPREF1181_RS04575 0.27 -0.1 158,455 + HMPREF1181_RS04575 0.27 -0.2 158,459 + HMPREF1181_RS04575 0.27 -1.1 158,489 - HMPREF1181_RS04575 0.28 -0.8 158,490 + HMPREF1181_RS04575 0.28 -0.1 158,491 - HMPREF1181_RS04575 0.28 +0.8 158,501 + HMPREF1181_RS04575 0.28 +0.2 158,501 + HMPREF1181_RS04575 0.28 +0.2 158,579 - HMPREF1181_RS04575 0.31 +0.1
Or see this region's nucleotide sequence