Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS03060

Experiment: RCM 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS03055 and HMPREF1181_RS03060 are separated by 26 nucleotidesHMPREF1181_RS03060 and HMPREF1181_RS03065 are separated by 29 nucleotides HMPREF1181_RS03055: HMPREF1181_RS03055 - glycosyltransferase family 2 protein, at 776,738 to 778,204 _RS03055 HMPREF1181_RS03060: HMPREF1181_RS03060 - PQQ-binding-like beta-propeller repeat protein, at 778,231 to 780,111 _RS03060 HMPREF1181_RS03065: HMPREF1181_RS03065 - hypothetical protein, at 780,141 to 783,230 _RS03065 Position (kb) 778 779 780 781Strain fitness (log2 ratio) -2 -1 0 1at 777.299 kb on - strand, within HMPREF1181_RS03055at 777.322 kb on + strand, within HMPREF1181_RS03055at 777.355 kb on + strand, within HMPREF1181_RS03055at 777.377 kb on - strand, within HMPREF1181_RS03055at 777.442 kb on + strand, within HMPREF1181_RS03055at 777.529 kb on - strand, within HMPREF1181_RS03055at 777.673 kb on + strand, within HMPREF1181_RS03055at 777.673 kb on + strand, within HMPREF1181_RS03055at 777.674 kb on - strand, within HMPREF1181_RS03055at 777.677 kb on + strand, within HMPREF1181_RS03055at 777.711 kb on - strand, within HMPREF1181_RS03055at 777.717 kb on + strand, within HMPREF1181_RS03055at 777.778 kb on + strand, within HMPREF1181_RS03055at 777.779 kb on - strand, within HMPREF1181_RS03055at 777.950 kb on - strand, within HMPREF1181_RS03055at 777.950 kb on - strand, within HMPREF1181_RS03055at 777.979 kb on - strand, within HMPREF1181_RS03055at 778.104 kb on - strandat 778.411 kb on + strandat 778.466 kb on - strand, within HMPREF1181_RS03060at 778.511 kb on + strand, within HMPREF1181_RS03060at 778.516 kb on + strand, within HMPREF1181_RS03060at 778.516 kb on + strand, within HMPREF1181_RS03060at 778.557 kb on + strand, within HMPREF1181_RS03060at 778.585 kb on + strand, within HMPREF1181_RS03060at 778.609 kb on + strand, within HMPREF1181_RS03060at 778.747 kb on + strand, within HMPREF1181_RS03060at 778.778 kb on + strand, within HMPREF1181_RS03060at 778.785 kb on + strand, within HMPREF1181_RS03060at 778.786 kb on - strand, within HMPREF1181_RS03060at 778.786 kb on - strand, within HMPREF1181_RS03060at 778.928 kb on + strand, within HMPREF1181_RS03060at 778.929 kb on - strand, within HMPREF1181_RS03060at 778.963 kb on + strand, within HMPREF1181_RS03060at 779.022 kb on - strand, within HMPREF1181_RS03060at 779.023 kb on + strand, within HMPREF1181_RS03060at 779.024 kb on - strand, within HMPREF1181_RS03060at 779.024 kb on - strand, within HMPREF1181_RS03060at 779.028 kb on + strand, within HMPREF1181_RS03060at 779.111 kb on - strand, within HMPREF1181_RS03060at 779.135 kb on + strand, within HMPREF1181_RS03060at 779.201 kb on + strand, within HMPREF1181_RS03060at 779.239 kb on + strand, within HMPREF1181_RS03060at 779.304 kb on - strand, within HMPREF1181_RS03060at 779.377 kb on - strand, within HMPREF1181_RS03060at 779.515 kb on + strand, within HMPREF1181_RS03060at 779.515 kb on + strand, within HMPREF1181_RS03060at 779.515 kb on + strand, within HMPREF1181_RS03060at 779.515 kb on + strand, within HMPREF1181_RS03060at 779.515 kb on + strand, within HMPREF1181_RS03060at 779.516 kb on - strand, within HMPREF1181_RS03060at 779.516 kb on - strand, within HMPREF1181_RS03060at 779.596 kb on + strand, within HMPREF1181_RS03060at 779.600 kb on - strand, within HMPREF1181_RS03060at 779.835 kb on - strand, within HMPREF1181_RS03060at 779.869 kb on + strand, within HMPREF1181_RS03060at 779.869 kb on + strand, within HMPREF1181_RS03060at 779.972 kb on - strandat 780.004 kb on + strandat 780.098 kb on - strandat 780.128 kb on + strandat 780.136 kb on - strandat 780.177 kb on - strandat 780.248 kb on + strandat 780.248 kb on + strandat 780.248 kb on + strandat 780.249 kb on - strandat 780.249 kb on - strandat 780.251 kb on - strandat 780.309 kb on - strandat 780.310 kb on + strandat 780.371 kb on + strandat 780.385 kb on + strandat 780.389 kb on + strandat 780.389 kb on + strandat 780.462 kb on - strand, within HMPREF1181_RS03065at 780.470 kb on + strand, within HMPREF1181_RS03065at 780.472 kb on + strand, within HMPREF1181_RS03065at 780.472 kb on + strand, within HMPREF1181_RS03065at 780.564 kb on + strand, within HMPREF1181_RS03065at 780.566 kb on + strand, within HMPREF1181_RS03065at 780.572 kb on + strand, within HMPREF1181_RS03065at 780.603 kb on - strand, within HMPREF1181_RS03065at 780.664 kb on - strand, within HMPREF1181_RS03065at 780.704 kb on - strand, within HMPREF1181_RS03065at 780.710 kb on - strand, within HMPREF1181_RS03065at 780.808 kb on + strand, within HMPREF1181_RS03065at 780.844 kb on + strand, within HMPREF1181_RS03065at 780.945 kb on - strand, within HMPREF1181_RS03065at 780.945 kb on - strand, within HMPREF1181_RS03065at 780.947 kb on - strand, within HMPREF1181_RS03065at 780.987 kb on + strand, within HMPREF1181_RS03065

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Per-strain Table

Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media
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777,299 - HMPREF1181_RS03055 0.38 -0.8
777,322 + HMPREF1181_RS03055 0.40 -0.6
777,355 + HMPREF1181_RS03055 0.42 +0.6
777,377 - HMPREF1181_RS03055 0.44 -0.0
777,442 + HMPREF1181_RS03055 0.48 +0.2
777,529 - HMPREF1181_RS03055 0.54 -0.1
777,673 + HMPREF1181_RS03055 0.64 -0.2
777,673 + HMPREF1181_RS03055 0.64 -0.5
777,674 - HMPREF1181_RS03055 0.64 -0.8
777,677 + HMPREF1181_RS03055 0.64 +0.2
777,711 - HMPREF1181_RS03055 0.66 +0.1
777,717 + HMPREF1181_RS03055 0.67 -0.2
777,778 + HMPREF1181_RS03055 0.71 +0.1
777,779 - HMPREF1181_RS03055 0.71 -0.2
777,950 - HMPREF1181_RS03055 0.83 +0.5
777,950 - HMPREF1181_RS03055 0.83 -0.2
777,979 - HMPREF1181_RS03055 0.85 -0.2
778,104 - -0.8
778,411 + +0.4
778,466 - HMPREF1181_RS03060 0.12 -0.8
778,511 + HMPREF1181_RS03060 0.15 -0.0
778,516 + HMPREF1181_RS03060 0.15 -0.3
778,516 + HMPREF1181_RS03060 0.15 +0.1
778,557 + HMPREF1181_RS03060 0.17 -0.0
778,585 + HMPREF1181_RS03060 0.19 -1.9
778,609 + HMPREF1181_RS03060 0.20 -0.8
778,747 + HMPREF1181_RS03060 0.27 -0.3
778,778 + HMPREF1181_RS03060 0.29 -0.7
778,785 + HMPREF1181_RS03060 0.29 -0.7
778,786 - HMPREF1181_RS03060 0.30 +0.8
778,786 - HMPREF1181_RS03060 0.30 -1.1
778,928 + HMPREF1181_RS03060 0.37 -0.8
778,929 - HMPREF1181_RS03060 0.37 -0.8
778,963 + HMPREF1181_RS03060 0.39 -0.1
779,022 - HMPREF1181_RS03060 0.42 -1.0
779,023 + HMPREF1181_RS03060 0.42 -1.4
779,024 - HMPREF1181_RS03060 0.42 -0.6
779,024 - HMPREF1181_RS03060 0.42 -1.4
779,028 + HMPREF1181_RS03060 0.42 +0.3
779,111 - HMPREF1181_RS03060 0.47 -0.9
779,135 + HMPREF1181_RS03060 0.48 -1.0
779,201 + HMPREF1181_RS03060 0.52 -1.0
779,239 + HMPREF1181_RS03060 0.54 +0.3
779,304 - HMPREF1181_RS03060 0.57 -1.3
779,377 - HMPREF1181_RS03060 0.61 +0.8
779,515 + HMPREF1181_RS03060 0.68 -1.0
779,515 + HMPREF1181_RS03060 0.68 +0.1
779,515 + HMPREF1181_RS03060 0.68 -0.0
779,515 + HMPREF1181_RS03060 0.68 +0.8
779,515 + HMPREF1181_RS03060 0.68 +0.0
779,516 - HMPREF1181_RS03060 0.68 -0.6
779,516 - HMPREF1181_RS03060 0.68 +0.2
779,596 + HMPREF1181_RS03060 0.73 -0.4
779,600 - HMPREF1181_RS03060 0.73 -0.4
779,835 - HMPREF1181_RS03060 0.85 -0.7
779,869 + HMPREF1181_RS03060 0.87 -1.7
779,869 + HMPREF1181_RS03060 0.87 +0.2
779,972 - +0.1
780,004 + +0.1
780,098 - -0.0
780,128 + -1.8
780,136 - -0.6
780,177 - -1.5
780,248 + +0.3
780,248 + -0.1
780,248 + -0.9
780,249 - -1.0
780,249 - +1.2
780,251 - -0.9
780,309 - -2.1
780,310 + -0.3
780,371 + -0.1
780,385 + -0.1
780,389 + -0.7
780,389 + +0.4
780,462 - HMPREF1181_RS03065 0.10 -0.9
780,470 + HMPREF1181_RS03065 0.11 -0.9
780,472 + HMPREF1181_RS03065 0.11 +0.4
780,472 + HMPREF1181_RS03065 0.11 -0.2
780,564 + HMPREF1181_RS03065 0.14 -0.5
780,566 + HMPREF1181_RS03065 0.14 -0.0
780,572 + HMPREF1181_RS03065 0.14 -0.3
780,603 - HMPREF1181_RS03065 0.15 -1.2
780,664 - HMPREF1181_RS03065 0.17 -0.9
780,704 - HMPREF1181_RS03065 0.18 -0.1
780,710 - HMPREF1181_RS03065 0.18 +0.3
780,808 + HMPREF1181_RS03065 0.22 -0.4
780,844 + HMPREF1181_RS03065 0.23 -0.1
780,945 - HMPREF1181_RS03065 0.26 -0.3
780,945 - HMPREF1181_RS03065 0.26 -0.9
780,947 - HMPREF1181_RS03065 0.26 -0.1
780,987 + HMPREF1181_RS03065 0.27 +0.1

Or see this region's nucleotide sequence