Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF936 and GFF937 overlap by 4 nucleotides GFF937 and GFF938 are separated by 3 nucleotides
GFF936 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,171 to 670,090
GFF936
GFF937 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 670,087 to 670,974
GFF937
GFF938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 670,978 to 672,030
GFF938
Position (kb) 670
671 Strain fitness (log2 ratio) -2
-1
0
1 at 669.255 kb on + strand, within GFF936 at 669.290 kb on + strand, within GFF936 at 669.290 kb on + strand, within GFF936 at 669.290 kb on + strand, within GFF936 at 669.290 kb on + strand, within GFF936 at 669.290 kb on + strand, within GFF936 at 669.291 kb on - strand, within GFF936 at 669.554 kb on + strand, within GFF936 at 669.647 kb on - strand, within GFF936 at 669.775 kb on - strand, within GFF936 at 669.974 kb on + strand at 669.974 kb on + strand at 669.974 kb on + strand at 669.974 kb on + strand at 670.108 kb on + strand at 670.108 kb on + strand at 670.109 kb on - strand at 670.109 kb on - strand at 670.142 kb on - strand at 670.372 kb on - strand, within GFF937 at 670.900 kb on + strand at 670.903 kb on - strand at 670.903 kb on - strand at 671.008 kb on + strand at 671.009 kb on - strand at 671.115 kb on - strand, within GFF938 at 671.120 kb on + strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.504 kb on - strand, within GFF938 at 671.705 kb on - strand, within GFF938
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 669,255 + GFF936 0.56 +0.3 669,290 + GFF936 0.58 +0.2 669,290 + GFF936 0.58 +0.1 669,290 + GFF936 0.58 -2.5 669,290 + GFF936 0.58 +0.3 669,290 + GFF936 0.58 +0.8 669,291 - GFF936 0.58 -0.1 669,554 + GFF936 0.72 +0.8 669,647 - GFF936 0.77 +0.2 669,775 - GFF936 0.84 +0.1 669,974 + -0.2 669,974 + -0.7 669,974 + +0.0 669,974 + +0.4 670,108 + +0.1 670,108 + +0.4 670,109 - -0.7 670,109 - -0.0 670,142 - -1.3 670,372 - GFF937 0.32 -0.6 670,900 + +1.1 670,903 - +1.6 670,903 - -0.8 671,008 + -0.2 671,009 - +0.6 671,115 - GFF938 0.13 -0.2 671,120 + GFF938 0.13 -0.5 671,504 - GFF938 0.50 +0.5 671,504 - GFF938 0.50 +0.8 671,504 - GFF938 0.50 -0.2 671,504 - GFF938 0.50 -0.7 671,705 - GFF938 0.69 +0.1
Or see this region's nucleotide sequence