Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF810

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF808 and GFF809 are separated by 5 nucleotidesGFF809 and GFF810 are separated by 4 nucleotidesGFF810 and GFF811 are separated by 106 nucleotides GFF808 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 504,020 to 504,403 GFF808 GFF809 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 504,409 to 505,116 GFF809 GFF810 - FIG00932425: hypothetical protein, at 505,121 to 505,912 GFF810 GFF811 - NADH dehydrogenase-like protein / Selenide,water dikinase (EC 2.7.9.3), at 506,019 to 507,161 GFF811 Position (kb) 505 506Strain fitness (log2 ratio) -1 0 1at 504.132 kb on - strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.248 kb on + strand, within GFF808at 504.249 kb on - strand, within GFF808at 504.249 kb on - strand, within GFF808at 504.557 kb on - strand, within GFF809at 504.871 kb on + strand, within GFF809at 504.871 kb on + strand, within GFF809at 504.871 kb on + strand, within GFF809at 504.892 kb on + strand, within GFF809at 504.892 kb on + strand, within GFF809at 504.893 kb on - strand, within GFF809at 504.893 kb on - strand, within GFF809at 504.893 kb on - strand, within GFF809at 505.000 kb on + strand, within GFF809at 505.000 kb on + strand, within GFF809at 505.001 kb on - strand, within GFF809at 505.001 kb on - strand, within GFF809at 505.001 kb on - strand, within GFF809at 505.001 kb on - strand, within GFF809at 505.122 kb on + strandat 505.123 kb on - strandat 505.209 kb on + strand, within GFF810at 505.210 kb on - strand, within GFF810at 505.210 kb on - strand, within GFF810at 505.210 kb on - strand, within GFF810at 505.489 kb on - strand, within GFF810at 505.540 kb on - strand, within GFF810at 505.596 kb on + strand, within GFF810at 505.596 kb on + strand, within GFF810at 505.596 kb on + strand, within GFF810at 505.597 kb on - strand, within GFF810at 505.597 kb on - strand, within GFF810at 505.597 kb on - strand, within GFF810at 505.597 kb on - strand, within GFF810at 505.741 kb on - strand, within GFF810at 505.741 kb on - strand, within GFF810at 505.782 kb on + strand, within GFF810at 505.782 kb on + strand, within GFF810at 505.782 kb on + strand, within GFF810at 505.783 kb on - strand, within GFF810at 505.956 kb on - strandat 506.469 kb on + strand, within GFF811at 506.470 kb on - strand, within GFF811at 506.470 kb on - strand, within GFF811at 506.837 kb on - strand, within GFF811

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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504,132 - GFF808 0.29 +0.5
504,248 + GFF808 0.59 -0.9
504,248 + GFF808 0.59 -0.4
504,248 + GFF808 0.59 -0.1
504,248 + GFF808 0.59 +0.2
504,248 + GFF808 0.59 +0.1
504,248 + GFF808 0.59 -0.1
504,249 - GFF808 0.60 -0.1
504,249 - GFF808 0.60 +0.4
504,557 - GFF809 0.21 +0.1
504,871 + GFF809 0.65 -1.4
504,871 + GFF809 0.65 -0.2
504,871 + GFF809 0.65 +0.5
504,892 + GFF809 0.68 +0.0
504,892 + GFF809 0.68 +0.1
504,893 - GFF809 0.68 +0.7
504,893 - GFF809 0.68 -0.9
504,893 - GFF809 0.68 -0.3
505,000 + GFF809 0.83 +0.1
505,000 + GFF809 0.83 +1.0
505,001 - GFF809 0.84 +0.5
505,001 - GFF809 0.84 +0.2
505,001 - GFF809 0.84 +0.4
505,001 - GFF809 0.84 +0.2
505,122 + -0.3
505,123 - -0.5
505,209 + GFF810 0.11 -0.6
505,210 - GFF810 0.11 +0.3
505,210 - GFF810 0.11 -0.6
505,210 - GFF810 0.11 -1.4
505,489 - GFF810 0.46 -0.0
505,540 - GFF810 0.53 -0.2
505,596 + GFF810 0.60 -0.9
505,596 + GFF810 0.60 -0.3
505,596 + GFF810 0.60 -0.7
505,597 - GFF810 0.60 -0.4
505,597 - GFF810 0.60 -1.7
505,597 - GFF810 0.60 +0.3
505,597 - GFF810 0.60 +0.4
505,741 - GFF810 0.78 +0.7
505,741 - GFF810 0.78 +0.4
505,782 + GFF810 0.83 -1.1
505,782 + GFF810 0.83 -0.8
505,782 + GFF810 0.83 +0.7
505,783 - GFF810 0.84 -0.4
505,956 - +0.5
506,469 + GFF811 0.39 +1.5
506,470 - GFF811 0.39 +0.3
506,470 - GFF811 0.39 -0.2
506,837 - GFF811 0.72 +0.4

Or see this region's nucleotide sequence