Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF674 and GFF675 are separated by 7 nucleotides GFF675 and GFF676 are separated by 118 nucleotides GFF676 and GFF677 are separated by 51 nucleotides GFF677 and GFF678 are separated by 80 nucleotides
GFF674 - hypothetical protein, at 359,871 to 360,107
GFF674
GFF675 - ATPase associated with various cellular activities, AAA_5, at 360,115 to 360,957
GFF675
GFF676 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 361,076 to 361,732
GFF676
GFF677 - FIG00433688: hypothetical protein, at 361,784 to 362,218
GFF677
GFF678 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 362,299 to 363,501
GFF678
Position (kb) 361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 360.332 kb on + strand, within GFF675 at 360.332 kb on + strand, within GFF675 at 360.333 kb on - strand, within GFF675 at 360.333 kb on - strand, within GFF675 at 360.431 kb on + strand, within GFF675 at 360.431 kb on + strand, within GFF675 at 360.432 kb on - strand, within GFF675 at 360.432 kb on - strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.678 kb on - strand, within GFF675 at 360.743 kb on + strand, within GFF675 at 360.749 kb on + strand, within GFF675 at 360.749 kb on + strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.016 kb on + strand at 361.016 kb on + strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.019 kb on - strand at 361.019 kb on - strand at 361.280 kb on + strand, within GFF676 at 361.280 kb on + strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.305 kb on - strand, within GFF676 at 361.343 kb on - strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.392 kb on - strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.524 kb on - strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.578 kb on - strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.644 kb on - strand, within GFF676 at 361.676 kb on + strand at 361.676 kb on + strand at 361.676 kb on + strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.822 kb on - strand at 361.822 kb on - strand at 362.091 kb on + strand, within GFF677 at 362.092 kb on - strand, within GFF677 at 362.267 kb on + strand at 362.267 kb on + strand at 362.268 kb on - strand at 362.719 kb on + strand, within GFF678 at 362.719 kb on + strand, within GFF678 at 362.720 kb on - strand, within GFF678 at 362.720 kb on - strand, within GFF678
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 360,332 + GFF675 0.26 +1.2 360,332 + GFF675 0.26 +0.4 360,333 - GFF675 0.26 -0.9 360,333 - GFF675 0.26 -0.7 360,431 + GFF675 0.37 +0.3 360,431 + GFF675 0.37 -0.9 360,432 - GFF675 0.38 +2.2 360,432 - GFF675 0.38 +0.8 360,539 + GFF675 0.50 +0.2 360,539 + GFF675 0.50 +0.3 360,539 + GFF675 0.50 +0.9 360,539 + GFF675 0.50 -0.7 360,540 - GFF675 0.50 +0.6 360,540 - GFF675 0.50 -0.3 360,540 - GFF675 0.50 +0.2 360,540 - GFF675 0.50 -0.3 360,540 - GFF675 0.50 -1.2 360,545 + GFF675 0.51 +0.1 360,545 + GFF675 0.51 +1.6 360,545 + GFF675 0.51 -4.0 360,545 + GFF675 0.51 -1.1 360,545 + GFF675 0.51 +0.6 360,546 - GFF675 0.51 +0.5 360,546 - GFF675 0.51 -0.1 360,546 - GFF675 0.51 +0.2 360,546 - GFF675 0.51 +0.0 360,546 - GFF675 0.51 +0.6 360,546 - GFF675 0.51 +0.8 360,677 + GFF675 0.67 -0.3 360,677 + GFF675 0.67 -0.3 360,677 + GFF675 0.67 +0.9 360,677 + GFF675 0.67 +0.3 360,677 + GFF675 0.67 -0.4 360,677 + GFF675 0.67 +0.7 360,677 + GFF675 0.67 -0.6 360,677 + GFF675 0.67 -2.1 360,678 - GFF675 0.67 +0.4 360,743 + GFF675 0.74 -0.1 360,749 + GFF675 0.75 -0.8 360,749 + GFF675 0.75 -0.1 360,750 - GFF675 0.75 +1.1 360,750 - GFF675 0.75 -0.1 360,750 - GFF675 0.75 -0.4 360,932 + -0.4 360,932 + +0.2 360,932 + -0.2 360,932 + +0.7 360,932 + +0.0 360,932 + +0.3 360,932 + -0.0 360,932 + -0.1 360,933 - -0.8 360,933 - +0.3 360,933 - +0.9 360,933 - -0.3 360,933 - -0.4 361,014 + +1.6 361,014 + +0.1 361,014 + -0.0 361,014 + +0.1 361,015 - -0.6 361,015 - +1.3 361,015 - -1.6 361,015 - +0.4 361,016 + -0.1 361,016 + +0.9 361,017 - -1.2 361,017 - +0.3 361,017 - -0.5 361,017 - -0.9 361,017 - -1.2 361,017 - -0.6 361,017 - +0.4 361,018 + -2.2 361,018 + -0.8 361,018 + -1.7 361,018 + -0.6 361,018 + -0.4 361,018 + -0.5 361,019 - -0.1 361,019 - -1.1 361,280 + GFF676 0.31 -2.4 361,280 + GFF676 0.31 -0.7 361,281 - GFF676 0.31 -2.7 361,281 - GFF676 0.31 -0.1 361,305 - GFF676 0.35 -1.1 361,343 - GFF676 0.41 -0.7 361,391 + GFF676 0.48 -3.0 361,391 + GFF676 0.48 -0.7 361,391 + GFF676 0.48 -1.7 361,392 - GFF676 0.48 -1.9 361,523 + GFF676 0.68 -0.6 361,523 + GFF676 0.68 -2.4 361,523 + GFF676 0.68 -0.9 361,524 - GFF676 0.68 +0.9 361,577 + GFF676 0.76 -0.8 361,577 + GFF676 0.76 -2.6 361,578 - GFF676 0.76 -2.0 361,643 + GFF676 0.86 -3.1 361,643 + GFF676 0.86 -1.1 361,643 + GFF676 0.86 -1.1 361,643 + GFF676 0.86 -1.1 361,644 - GFF676 0.86 -2.0 361,676 + -1.2 361,676 + -2.1 361,676 + -2.2 361,677 - -2.9 361,677 - -1.8 361,677 - -1.7 361,677 - -3.1 361,677 - -2.6 361,677 - -1.8 361,677 - -1.0 361,821 + -1.8 361,821 + -0.8 361,821 + -1.4 361,821 + -1.0 361,821 + -0.9 361,821 + -0.9 361,821 + -0.1 361,821 + -0.1 361,821 + -0.3 361,822 - +0.1 361,822 - -0.8 362,091 + GFF677 0.71 -0.1 362,092 - GFF677 0.71 -0.9 362,267 + -0.1 362,267 + +0.2 362,268 - -0.1 362,719 + GFF678 0.35 -1.0 362,719 + GFF678 0.35 +0.3 362,720 - GFF678 0.35 -0.3 362,720 - GFF678 0.35 -0.4
Or see this region's nucleotide sequence