Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF573 and GFF574 are separated by 4 nucleotides GFF574 and GFF575 overlap by 4 nucleotides GFF575 and GFF576 are separated by 36 nucleotides GFF576 and GFF577 are separated by 34 nucleotides
GFF573 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 244,749 to 245,741
GFF573
GFF574 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 245,746 to 246,363
GFF574
GFF575 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 246,360 to 247,082
GFF575
GFF576 - TonB, C-terminal precursor, at 247,119 to 247,988
GFF576
GFF577 - Exoribonuclease II (EC 3.1.13.1), at 248,023 to 250,098
GFF577
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.371 kb on + strand, within GFF573 at 245.372 kb on - strand, within GFF573 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.954 kb on + strand, within GFF574 at 245.955 kb on - strand, within GFF574 at 246.096 kb on - strand, within GFF574 at 246.096 kb on - strand, within GFF574 at 246.152 kb on + strand, within GFF574 at 246.152 kb on + strand, within GFF574 at 246.153 kb on - strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.251 kb on + strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.252 kb on - strand, within GFF574 at 246.285 kb on - strand, within GFF574 at 246.419 kb on - strand at 246.419 kb on - strand at 246.419 kb on - strand at 246.419 kb on - strand at 246.521 kb on - strand, within GFF575 at 246.580 kb on + strand, within GFF575 at 246.580 kb on + strand, within GFF575 at 246.581 kb on - strand, within GFF575 at 246.581 kb on - strand, within GFF575 at 247.120 kb on + strand at 247.120 kb on + strand at 247.120 kb on + strand at 247.121 kb on - strand at 247.121 kb on - strand at 247.121 kb on - strand at 247.121 kb on - strand at 247.426 kb on + strand, within GFF576 at 247.427 kb on - strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on + strand, within GFF576 at 247.429 kb on - strand, within GFF576 at 247.430 kb on - strand, within GFF576 at 247.438 kb on + strand, within GFF576 at 247.438 kb on + strand, within GFF576 at 247.438 kb on + strand, within GFF576 at 247.438 kb on + strand, within GFF576 at 247.438 kb on + strand, within GFF576 at 247.439 kb on - strand, within GFF576 at 247.439 kb on - strand, within GFF576 at 247.439 kb on - strand, within GFF576 at 247.468 kb on + strand, within GFF576 at 247.468 kb on + strand, within GFF576 at 247.468 kb on + strand, within GFF576 at 247.468 kb on + strand, within GFF576 at 247.468 kb on + strand, within GFF576 at 247.469 kb on - strand, within GFF576 at 247.469 kb on - strand, within GFF576 at 247.966 kb on + strand at 247.966 kb on + strand at 247.967 kb on - strand at 247.967 kb on - strand at 247.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 245,371 + GFF573 0.63 +1.7 245,372 - GFF573 0.63 -1.1 245,954 + GFF574 0.34 +0.6 245,954 + GFF574 0.34 +0.2 245,954 + GFF574 0.34 +0.6 245,954 + GFF574 0.34 -0.1 245,955 - GFF574 0.34 -0.2 246,096 - GFF574 0.57 +1.3 246,096 - GFF574 0.57 -0.1 246,152 + GFF574 0.66 +0.2 246,152 + GFF574 0.66 +0.5 246,153 - GFF574 0.66 -1.0 246,251 + GFF574 0.82 +0.4 246,251 + GFF574 0.82 -0.3 246,251 + GFF574 0.82 -1.4 246,252 - GFF574 0.82 -0.1 246,252 - GFF574 0.82 -1.4 246,252 - GFF574 0.82 -0.2 246,252 - GFF574 0.82 +0.6 246,285 - GFF574 0.87 -0.5 246,419 - +0.1 246,419 - +1.6 246,419 - -0.9 246,419 - +0.4 246,521 - GFF575 0.22 -0.9 246,580 + GFF575 0.30 -0.1 246,580 + GFF575 0.30 +0.2 246,581 - GFF575 0.31 +0.6 246,581 - GFF575 0.31 -0.9 247,120 + -0.6 247,120 + -0.0 247,120 + +1.5 247,121 - +0.0 247,121 - -0.5 247,121 - -0.1 247,121 - -2.1 247,426 + GFF576 0.35 +0.4 247,427 - GFF576 0.35 -0.7 247,429 + GFF576 0.36 -2.3 247,429 + GFF576 0.36 -0.0 247,429 + GFF576 0.36 -0.5 247,429 + GFF576 0.36 +0.9 247,429 + GFF576 0.36 -0.2 247,429 + GFF576 0.36 -1.1 247,429 - GFF576 0.36 -0.3 247,430 - GFF576 0.36 -0.9 247,438 + GFF576 0.37 +0.3 247,438 + GFF576 0.37 -0.2 247,438 + GFF576 0.37 -0.8 247,438 + GFF576 0.37 +0.5 247,438 + GFF576 0.37 +1.2 247,439 - GFF576 0.37 -1.9 247,439 - GFF576 0.37 -0.1 247,439 - GFF576 0.37 +0.1 247,468 + GFF576 0.40 -0.8 247,468 + GFF576 0.40 -0.1 247,468 + GFF576 0.40 +1.5 247,468 + GFF576 0.40 +0.2 247,468 + GFF576 0.40 +0.0 247,469 - GFF576 0.40 +1.7 247,469 - GFF576 0.40 +0.4 247,966 + +0.7 247,966 + -0.7 247,967 - -0.7 247,967 - +1.9 247,967 - -1.0
Or see this region's nucleotide sequence