Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5665

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,688,078	-				+0.0
2,688,078	-				+0.4
2,688,946	+		GFF5665	0.11	+0.2
2,688,955	+		GFF5665	0.12	+0.1
2,688,955	+		GFF5665	0.12	+0.9
2,688,955	+		GFF5665	0.12	-0.1
2,689,127	-		GFF5665	0.26	+0.2
2,689,192	+		GFF5665	0.31	+0.5
2,689,228	+		GFF5665	0.34	-0.6
2,689,228	+		GFF5665	0.34	+0.2
2,689,229	-		GFF5665	0.34	+0.3
2,689,387	-		GFF5665	0.47	-0.7
2,689,388	-		GFF5665	0.48	-0.0
2,689,604	-		GFF5665	0.66	+1.0
2,689,619	-		GFF5665	0.67	+0.2
2,689,720	+		GFF5665	0.75	-0.5
2,690,023	+				-0.2
2,690,342	-		GFF5666	0.22	+0.1
2,690,518	+		GFF5666	0.34	+0.5
2,690,519	-		GFF5666	0.34	+0.9