Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5592

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,606,125	-		GFF5591	0.63	-0.3
2,606,125	-		GFF5591	0.63	-1.1
2,606,196	+		GFF5591	0.66	-1.0
2,606,304	+		GFF5591	0.71	+0.0
2,606,304	+		GFF5591	0.71	-0.1
2,606,305	-		GFF5591	0.71	-0.0
2,606,305	-		GFF5591	0.71	+0.1
2,606,305	-		GFF5591	0.71	-0.7
2,606,305	-		GFF5591	0.71	+0.9
2,606,305	-		GFF5591	0.71	-0.1
2,606,538	+		GFF5591	0.81	+0.0
2,606,559	+		GFF5591	0.82	-0.5
2,606,559	+		GFF5591	0.82	-0.5
2,606,559	+		GFF5591	0.82	+0.8
2,606,559	+		GFF5591	0.82	-1.5
2,606,560	-		GFF5591	0.82	-0.4
2,606,624	+		GFF5591	0.85	+0.4
2,606,624	+		GFF5591	0.85	+0.5
2,606,625	-		GFF5591	0.85	-0.3
2,606,634	+		GFF5591	0.85	+0.1
2,606,635	-		GFF5591	0.85	+0.2
2,606,685	+		GFF5591	0.88	+0.5
2,606,686	-		GFF5591	0.88	+0.5
2,606,686	-		GFF5591	0.88	-0.4
2,606,686	-		GFF5591	0.88	-0.2
2,607,446	+		GFF5592	0.30	-0.0
2,607,447	-		GFF5592	0.30	-0.3
2,607,833	+		GFF5592	0.61	-1.2
2,607,833	+		GFF5592	0.61	-0.6
2,607,833	+		GFF5592	0.61	+0.2
2,607,834	-		GFF5592	0.61	-0.1
2,607,834	-		GFF5592	0.61	-0.3
2,607,870	-		GFF5592	0.64	-0.4
2,608,422	-				+0.9
2,608,494	-				+0.2
2,608,496	+				+1.0
2,608,496	+				-0.7
2,608,496	+				+0.4
2,608,497	-				-0.0
2,608,497	-				-0.9
2,608,559	+		GFF5593	0.19	+1.2
2,608,998	-				+0.5
2,609,275	+		GFF5594	0.14	-0.5
2,609,312	-		GFF5594	0.16	-0.6
2,609,312	-		GFF5594	0.16	-0.0
2,609,312	-		GFF5594	0.16	+0.9