Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5511

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,510,712	+		GFF5509	0.65	-0.3
2,511,092	-				+0.1
2,511,131	+				-0.5
2,511,131	+				+0.9
2,511,131	+				+0.9
2,511,131	+				-0.2
2,511,137	+				+0.1
2,511,171	-		GFF5510	0.17	-0.4
2,511,326	+		GFF5510	0.71	-0.7
2,511,326	+		GFF5510	0.71	+0.9
2,511,327	-		GFF5510	0.71	-0.0
2,511,404	+				-0.4
2,511,405	-				-0.5
2,511,452	+				-0.5
2,511,453	-				+1.1
2,511,453	-				+0.1
2,511,566	+		GFF5511	0.12	-0.1
2,511,567	-		GFF5511	0.12	-1.5
2,511,632	+		GFF5511	0.17	-0.1
2,511,674	+		GFF5511	0.20	-0.1
2,511,755	+		GFF5511	0.26	+0.0
2,511,756	-		GFF5511	0.26	-0.6
2,511,756	-		GFF5511	0.26	-0.0
2,511,839	+		GFF5511	0.32	-0.3
2,511,839	+		GFF5511	0.32	+0.3
2,511,867	-		GFF5511	0.34	-0.1
2,512,565	+		GFF5511	0.86	-1.0
2,512,565	+		GFF5511	0.86	+0.3
2,512,574	+		GFF5511	0.87	+0.3
2,512,574	+		GFF5511	0.87	+0.1
2,512,574	+		GFF5511	0.87	-0.6
2,512,574	+		GFF5511	0.87	+0.6
2,512,574	+		GFF5511	0.87	+0.2
2,512,575	-		GFF5511	0.87	+0.4
2,512,575	-		GFF5511	0.87	-0.4
2,512,745	+				-0.3
2,512,746	-				-0.1
2,513,002	-		GFF5512	0.11	-1.9
2,513,032	-		GFF5512	0.13	+0.2
2,513,502	+		GFF5512	0.45	-0.5
2,513,502	+		GFF5512	0.45	-0.2
2,513,502	+		GFF5512	0.45	+0.9
2,513,503	-		GFF5512	0.45	+0.5
2,513,503	-		GFF5512	0.45	-0.2
2,513,503	-		GFF5512	0.45	-0.0
2,513,514	+		GFF5512	0.46	-0.1
2,513,515	-		GFF5512	0.46	-0.2
2,513,515	-		GFF5512	0.46	+0.3
2,513,515	-		GFF5512	0.46	+0.7