Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5199

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,214,489	+		GFF5197	0.62	-0.8
2,214,523	-		GFF5197	0.67	+0.3
2,214,798	-				+0.4
2,214,810	-				-0.5
2,214,816	+				-0.7
2,214,862	+				+0.3
2,215,018	+		GFF5198	0.30	+0.1
2,215,069	+		GFF5198	0.39	+0.3
2,215,069	+		GFF5198	0.39	+0.5
2,215,070	-		GFF5198	0.40	-0.3
2,215,070	-		GFF5198	0.40	+0.5
2,215,331	-		GFF5198	0.87	+0.2
2,215,355	-				-0.2
2,215,355	-				+0.1
2,215,458	-				+0.1
2,215,595	+				-0.2
2,215,595	+				+0.1
2,215,596	-				+0.2
2,215,596	-				-0.6
2,215,596	-				+0.2
2,215,596	-				+0.1
2,215,938	-		GFF5199	0.30	-0.0
2,215,938	-		GFF5199	0.30	+0.1
2,216,018	+		GFF5199	0.35	-0.1
2,216,019	-		GFF5199	0.35	+0.1
2,216,019	-		GFF5199	0.35	-0.1
2,216,057	+		GFF5199	0.37	+1.1
2,216,058	-		GFF5199	0.37	+0.1
2,216,058	-		GFF5199	0.37	-0.7
2,216,130	-		GFF5199	0.42	+0.0
2,216,273	+		GFF5199	0.50	-0.1
2,216,433	-		GFF5199	0.60	+0.4
2,216,433	-		GFF5199	0.60	-0.5
2,216,450	+		GFF5199	0.61	-0.4
2,216,450	+		GFF5199	0.61	-0.3
2,216,450	+		GFF5199	0.61	+0.6
2,216,450	+		GFF5199	0.61	+0.1
2,216,451	-		GFF5199	0.61	-0.2
2,216,451	-		GFF5199	0.61	-0.9
2,216,451	-		GFF5199	0.61	-0.2
2,216,451	-		GFF5199	0.61	+0.6
2,216,543	+		GFF5199	0.67	-0.3
2,216,544	-		GFF5199	0.67	+0.4
2,216,657	+		GFF5199	0.74	-0.6
2,216,657	+		GFF5199	0.74	+0.1
2,216,657	+		GFF5199	0.74	+0.3
2,216,657	+		GFF5199	0.74	+0.1
2,216,733	-		GFF5199	0.78	+0.6
2,216,744	+		GFF5199	0.79	-0.0
2,216,744	+		GFF5199	0.79	-0.6
2,217,155	-				-0.1
2,217,319	+		GFF5200	0.22	+0.7
2,217,319	+		GFF5200	0.22	+0.5
2,217,322	+		GFF5200	0.23	+0.3
2,217,322	+		GFF5200	0.23	+1.1
2,217,323	-		GFF5200	0.23	+1.8
2,217,649	+		GFF5200	0.56	+1.3
2,217,649	+		GFF5200	0.56	+0.7
2,217,650	-		GFF5200	0.56	-0.0
2,217,650	-		GFF5200	0.56	-0.1
2,218,064	-				+0.5
2,218,064	-				+0.3
2,218,086	+				+0.1