Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5140

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,149,616	+				-1.5
2,150,614	-				+0.1
2,150,614	-				-0.3
2,150,614	-				-0.2
2,150,648	-				-0.9
2,150,648	-				-0.7
2,150,648	-				-0.1
2,150,648	-				-1.0
2,150,649	+				+1.7
2,150,649	+				-0.7
2,150,649	+				+0.3
2,150,650	-				+0.2
2,150,650	-				-0.5
2,150,650	-				-0.6
2,150,733	+		GFF5140	0.19	-0.9
2,150,734	-		GFF5140	0.19	+0.1
2,150,777	+		GFF5140	0.26	-0.9
2,150,777	+		GFF5140	0.26	-0.5
2,150,777	+		GFF5140	0.26	-0.4
2,150,778	-		GFF5140	0.26	-0.1
2,150,778	-		GFF5140	0.26	-1.8
2,150,780	+		GFF5140	0.26	-0.1
2,150,780	+		GFF5140	0.26	-1.9
2,150,780	+		GFF5140	0.26	-0.7
2,150,780	+		GFF5140	0.26	-0.5
2,150,780	+		GFF5140	0.26	+0.1
2,150,781	-		GFF5140	0.26	+0.2
2,150,781	-		GFF5140	0.26	-0.4
2,150,943	+		GFF5140	0.51	+1.6
2,150,944	-		GFF5140	0.51	+1.4