Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5115

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,125,209	-		GFF5113	0.65	-0.8
2,126,147	+				+0.1
2,126,148	-				+0.6
2,127,375	+		GFF5116	0.10	-1.5
2,127,376	-		GFF5116	0.10	+0.3
2,127,454	-		GFF5116	0.20	-0.1
2,127,454	-		GFF5116	0.20	-0.5
2,127,476	+		GFF5116	0.22	-0.0
2,127,519	+		GFF5116	0.28	-0.7
2,127,519	+		GFF5116	0.28	-0.5
2,127,519	+		GFF5116	0.28	+0.2
2,127,520	-		GFF5116	0.28	-0.2
2,127,520	-		GFF5116	0.28	+0.7
2,127,552	+		GFF5116	0.32	-0.3
2,127,552	+		GFF5116	0.32	+0.2
2,127,552	+		GFF5116	0.32	+0.1
2,127,552	+		GFF5116	0.32	+0.1
2,127,553	-		GFF5116	0.32	-0.2
2,127,564	+		GFF5116	0.33	+0.7
2,127,564	+		GFF5116	0.33	+2.2
2,127,564	+		GFF5116	0.33	+0.1
2,127,565	-		GFF5116	0.33	+1.0
2,127,565	-		GFF5116	0.33	-0.1
2,127,565	-		GFF5116	0.33	-0.2
2,127,669	+		GFF5116	0.46	+0.2
2,127,669	+		GFF5116	0.46	-0.0
2,127,669	+		GFF5116	0.46	-0.7
2,127,670	-		GFF5116	0.46	+0.2
2,127,784	-		GFF5116	0.60	-0.1
2,127,936	+		GFF5116	0.78	-0.5
2,127,936	+		GFF5116	0.78	+0.4
2,128,086	+				-0.0
2,128,087	-				-0.1
2,128,087	-				-0.9
2,128,212	+				+0.2
2,128,255	+				-0.2