Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5099

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
2,114,583	+				+0.0
2,114,583	+				-0.9
2,114,886	+		GFF5098	0.40	-0.4
2,114,886	+		GFF5098	0.40	-0.2
2,114,886	+		GFF5098	0.40	-0.1
2,114,887	-		GFF5098	0.40	-0.0
2,114,887	-		GFF5098	0.40	+0.9
2,114,887	-		GFF5098	0.40	+0.1
2,115,138	+		GFF5098	0.67	-1.4
2,115,138	+		GFF5098	0.67	-0.5
2,115,252	+		GFF5098	0.80	-0.1
2,115,252	+		GFF5098	0.80	-0.4
2,115,252	+		GFF5098	0.80	+0.0
2,115,253	-		GFF5098	0.80	+0.2
2,115,253	-		GFF5098	0.80	-0.5
2,115,261	+		GFF5098	0.81	-0.2
2,115,261	+		GFF5098	0.81	+0.4
2,115,262	-		GFF5098	0.81	-0.2
2,115,680	+		GFF5099	0.23	-0.5
2,115,680	+		GFF5099	0.23	-0.3
2,116,133	+		GFF5099	0.64	+0.7
2,116,133	+		GFF5099	0.64	-0.8
2,116,134	-		GFF5099	0.64	+0.3
2,116,256	+		GFF5099	0.75	-0.1
2,116,256	+		GFF5099	0.75	+0.1
2,116,397	+		GFF5099	0.88	+0.3
2,116,398	-		GFF5099	0.89	-1.1
2,116,398	-		GFF5099	0.89	-0.3
2,116,535	+				+1.1
2,116,535	+				-1.5
2,116,536	-				-1.1
2,116,544	+				-0.1
2,116,544	+				-0.1
2,116,545	-				-0.1
2,116,615	+		GFF5100	0.16	+0.1
2,116,860	+				+1.5
2,116,861	-				+0.9
2,116,861	-				-0.7
2,116,885	+				-0.5
2,116,886	-				+0.9