Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4846

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,853,064	-		GFF4844	0.54	-0.4
1,853,064	-		GFF4844	0.54	+1.4
1,853,243	+		GFF4844	0.68	-0.1
1,853,243	+		GFF4844	0.68	-0.3
1,853,244	-		GFF4844	0.68	-0.3
1,853,244	-		GFF4844	0.68	+0.3
1,853,403	-		GFF4844	0.80	+0.5
1,853,553	-				-0.5
1,853,573	+				-0.2
1,853,573	+				-0.2
1,853,573	+				-0.8
1,853,573	+				-0.7
1,853,573	+				-0.1
1,853,573	+				+0.9
1,853,573	+				+0.5
1,853,573	+				-1.1
1,853,573	+				+0.2
1,853,574	-				+0.1
1,853,574	-				+0.5
1,853,574	-				-1.1
1,853,574	-				-0.0
1,853,574	-				+0.3
1,853,574	-				-1.0
1,853,574	-				-0.1
1,853,574	-				-0.9
1,854,137	+		GFF4846	0.20	+0.0
1,854,269	+		GFF4846	0.39	+0.3
1,854,270	-		GFF4846	0.39	-0.0
1,854,270	-		GFF4846	0.39	+0.5
1,854,722	-				+0.3
1,854,722	-				+0.8
1,854,722	-				+1.3
1,855,161	-		GFF4847	0.70	+0.6
1,855,161	-		GFF4847	0.70	-0.5
1,855,161	-		GFF4847	0.70	+0.4
1,855,538	+		GFF4848	0.15	+0.0
1,855,538	+		GFF4848	0.15	+1.3
1,855,538	+		GFF4848	0.15	+1.3
1,855,538	+		GFF4848	0.15	-0.1
1,855,538	+		GFF4848	0.15	-0.5
1,855,538	+		GFF4848	0.15	+0.3
1,855,539	-		GFF4848	0.15	+0.7
1,855,539	-		GFF4848	0.15	-0.1
1,855,539	-		GFF4848	0.15	+0.9
1,855,539	-		GFF4848	0.15	+0.5
1,855,539	-		GFF4848	0.15	+0.1
1,855,658	+		GFF4848	0.26	-0.2
1,855,658	+		GFF4848	0.26	+0.4
1,855,659	-		GFF4848	0.26	+0.1
1,855,659	-		GFF4848	0.26	+0.0