Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4736

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,692,896	+		GFF4735	0.16	-0.1
1,692,896	+		GFF4735	0.16	+0.4
1,692,896	+		GFF4735	0.16	+2.5
1,692,897	-		GFF4735	0.16	-0.9
1,692,897	-		GFF4735	0.16	+1.5
1,692,932	+		GFF4735	0.20	+0.4
1,692,932	+		GFF4735	0.20	-0.1
1,692,932	+		GFF4735	0.20	+1.3
1,692,932	+		GFF4735	0.20	-0.9
1,693,140	-		GFF4735	0.40	-0.0
1,693,140	-		GFF4735	0.40	+0.9
1,693,214	+		GFF4735	0.47	+0.1
1,693,215	-		GFF4735	0.47	-0.3
1,693,274	+		GFF4735	0.53	-0.1
1,693,274	+		GFF4735	0.53	-1.3
1,693,275	-		GFF4735	0.53	+0.0
1,693,275	-		GFF4735	0.53	+0.7
1,693,428	-		GFF4735	0.68	-0.4
1,693,428	-		GFF4735	0.68	-0.9
1,693,574	+		GFF4735	0.83	+0.1
1,693,575	-		GFF4735	0.83	-1.1
1,693,575	-		GFF4735	0.83	+0.3
1,693,575	-		GFF4735	0.83	+0.3
1,693,601	+		GFF4735	0.85	-1.4
1,693,602	-		GFF4735	0.85	+0.5
1,693,602	-		GFF4735	0.85	+0.0
1,693,810	+				+0.2
1,693,810	+				+0.1
1,693,810	+				+0.2
1,693,811	-				+0.8
1,693,811	-				+0.0
1,693,811	-				+0.2
1,693,811	-				+0.0
1,693,811	-				-1.4
1,693,827	+				+0.1
1,693,827	+				-0.6
1,693,854	+				-0.5
1,693,855	-				+1.1
1,693,886	-				+0.1
1,693,886	-				-0.5
1,693,886	-				+0.7
1,693,886	-				+0.0
1,693,908	-				-0.1
1,694,027	+		GFF4736	0.17	+0.9
1,694,027	+		GFF4736	0.17	-0.6
1,694,085	+		GFF4736	0.23	-0.1
1,694,085	+		GFF4736	0.23	+0.1
1,694,085	+		GFF4736	0.23	+0.2
1,694,085	+		GFF4736	0.23	+0.6
1,694,085	+		GFF4736	0.23	-0.0
1,694,085	+		GFF4736	0.23	+0.5
1,694,085	+		GFF4736	0.23	-0.4
1,694,085	+		GFF4736	0.23	-0.3
1,694,086	-		GFF4736	0.23	+0.4
1,694,086	-		GFF4736	0.23	+0.0
1,694,086	-		GFF4736	0.23	-0.1
1,694,086	-		GFF4736	0.23	-0.1
1,694,086	-		GFF4736	0.23	+0.2
1,694,095	-		GFF4736	0.23	+0.8
1,694,178	+		GFF4736	0.31	+0.8
1,694,179	-		GFF4736	0.31	+0.4
1,694,179	-		GFF4736	0.31	-0.7
1,694,277	+		GFF4736	0.39	-0.4
1,694,277	+		GFF4736	0.39	-0.5
1,694,277	+		GFF4736	0.39	+0.9
1,694,277	+		GFF4736	0.39	+0.0
1,694,277	+		GFF4736	0.39	+0.0
1,694,277	+		GFF4736	0.39	+0.9
1,694,278	-		GFF4736	0.39	+0.2
1,694,278	-		GFF4736	0.39	-0.1
1,694,278	-		GFF4736	0.39	-0.1
1,694,415	+		GFF4736	0.51	-0.5
1,694,415	+		GFF4736	0.51	+0.1
1,694,415	+		GFF4736	0.51	-0.1
1,694,415	+		GFF4736	0.51	-0.5
1,694,415	+		GFF4736	0.51	+0.1
1,694,415	+		GFF4736	0.51	-0.1
1,694,415	+		GFF4736	0.51	+0.5
1,694,415	+		GFF4736	0.51	+2.2
1,694,415	+		GFF4736	0.51	+0.4
1,694,416	-		GFF4736	0.51	-0.1
1,694,416	-		GFF4736	0.51	+0.3
1,694,416	-		GFF4736	0.51	-0.6
1,694,416	-		GFF4736	0.51	-0.1
1,694,416	-		GFF4736	0.51	+0.1
1,694,416	-		GFF4736	0.51	-0.1
1,694,416	-		GFF4736	0.51	-0.7
1,694,416	-		GFF4736	0.51	+0.0
1,694,520	+		GFF4736	0.60	+0.8
1,694,520	+		GFF4736	0.60	+0.6
1,694,520	+		GFF4736	0.60	-0.7
1,694,520	+		GFF4736	0.60	+1.7
1,694,520	+		GFF4736	0.60	+0.5
1,694,520	+		GFF4736	0.60	-0.8
1,694,521	-		GFF4736	0.60	-0.0
1,694,521	-		GFF4736	0.60	+0.0
1,694,521	-		GFF4736	0.60	+0.2
1,694,550	+		GFF4736	0.63	+1.1
1,694,550	+		GFF4736	0.63	+0.3
1,694,550	+		GFF4736	0.63	-0.9
1,694,550	+		GFF4736	0.63	-0.2
1,694,550	+		GFF4736	0.63	+0.4
1,694,551	-		GFF4736	0.63	+0.6
1,694,610	+		GFF4736	0.68	+2.7
1,694,770	-		GFF4736	0.82	-0.0
1,694,805	+		GFF4736	0.85	-0.1
1,694,805	+		GFF4736	0.85	+1.3
1,694,806	-		GFF4736	0.85	+0.7
1,694,806	-		GFF4736	0.85	-0.2
1,694,806	-		GFF4736	0.85	-0.1
1,694,811	+		GFF4736	0.86	-0.8
1,694,812	-		GFF4736	0.86	+0.0
1,694,812	-		GFF4736	0.86	+0.1
1,694,826	+		GFF4736	0.87	+0.2
1,694,826	+		GFF4736	0.87	+0.9
1,694,884	-				+0.1
1,694,884	-				-0.3
1,694,884	-				-1.0
1,694,884	-				+1.9
1,695,333	-		GFF4737	0.56	+0.4
1,695,389	+		GFF4737	0.64	-1.9
1,695,390	-		GFF4737	0.64	-0.6
1,695,390	-		GFF4737	0.64	+0.1
1,695,390	-		GFF4737	0.64	+0.4
1,695,390	-		GFF4737	0.64	+0.1
1,695,659	-				-0.2
1,695,687	-				+0.0
1,695,725	+				+0.9
1,695,725	+				+0.1
1,695,725	+				-0.2
1,695,725	+				-0.2
1,695,725	+				+0.3
1,695,725	+				+1.2
1,695,725	+				-0.3
1,695,726	-				+0.1
1,695,726	-				-0.4
1,695,726	-				-2.6
1,695,726	-				+0.3
1,695,726	-				-0.3
1,695,782	+				+0.5
1,695,782	+				-0.0
1,695,782	+				-0.9
1,695,782	+				-0.4
1,695,782	+				+0.4
1,695,782	+				-0.5
1,695,782	+				+0.6
1,695,782	+				-0.2
1,695,783	-				-0.2
1,695,783	-				+0.6
1,695,783	-				-0.1
1,695,783	-				-0.3
1,695,783	-				+1.9
1,695,783	-				-0.3
1,695,783	-				+1.0
1,695,783	-				-0.1
1,695,783	-				+0.9
1,695,789	+				-0.5
1,695,829	-				+0.9
1,695,872	+				-0.0
1,695,873	-				+0.3