Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4490

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,414,844	-				+1.6
1,414,870	+				+0.6
1,414,870	+				+0.4
1,415,029	+		GFF4489	0.24	+0.4
1,415,030	-		GFF4489	0.24	+0.6
1,415,030	-		GFF4489	0.24	+1.9
1,415,203	+		GFF4489	0.43	+0.9
1,415,251	+		GFF4489	0.48	+1.3
1,415,261	-		GFF4489	0.49	+0.5
1,415,365	+		GFF4489	0.61	+0.7
1,415,365	+		GFF4489	0.61	+0.3
1,415,365	+		GFF4489	0.61	+0.6
1,415,366	-		GFF4489	0.61	+0.7
1,415,366	-		GFF4489	0.61	-0.1
1,415,413	+		GFF4489	0.66	+0.3
1,415,414	-		GFF4489	0.66	-0.3
1,415,530	+		GFF4489	0.79	+0.5
1,415,530	+		GFF4489	0.79	-0.2
1,415,545	+		GFF4489	0.81	-0.1
1,415,545	+		GFF4489	0.81	+0.1
1,415,545	+		GFF4489	0.81	+0.4
1,415,545	+		GFF4489	0.81	+0.0
1,415,545	+		GFF4489	0.81	+2.2
1,415,546	-		GFF4489	0.81	+0.5
1,415,546	-		GFF4489	0.81	+0.5
1,415,546	-		GFF4489	0.81	+1.3
1,415,546	-		GFF4489	0.81	-0.1
1,415,546	-		GFF4489	0.81	-0.1
1,415,546	-		GFF4489	0.81	-1.2
1,415,546	-		GFF4489	0.81	+0.1
1,415,632	+				+0.5
1,415,868	-				+1.0
1,415,868	-				+0.9
1,415,868	-				+0.0
1,415,868	-				+0.5
1,415,868	-				+0.4
1,415,868	-				+0.8
1,415,952	-		GFF4490	0.15	+0.5
1,415,952	-		GFF4490	0.15	+1.0
1,416,024	-		GFF4490	0.21	+0.6
1,416,038	+		GFF4490	0.22	+0.3
1,416,039	-		GFF4490	0.22	+0.7
1,416,120	-		GFF4490	0.29	+0.7
1,416,197	+		GFF4490	0.35	+2.0
1,416,387	-		GFF4490	0.51	+0.7
1,416,387	-		GFF4490	0.51	+0.1
1,416,387	-		GFF4490	0.51	+0.8
1,416,387	-		GFF4490	0.51	+0.1
1,416,387	-		GFF4490	0.51	+1.6
1,416,429	-		GFF4490	0.55	+1.5
1,416,737	+		GFF4490	0.81	+0.2
1,416,737	+		GFF4490	0.81	+0.1
1,416,737	+		GFF4490	0.81	+1.0
1,416,737	+		GFF4490	0.81	+0.4
1,416,738	-		GFF4490	0.81	-0.0
1,416,836	+		GFF4490	0.89	+0.9
1,416,837	-		GFF4490	0.89	+0.1
1,417,004	+				+1.1
1,417,005	-				-0.1
1,417,037	+				-0.3
1,417,038	-				+0.3
1,417,044	-				+0.1
1,417,063	+				-0.7
1,417,063	+				+0.4
1,417,063	+				-0.4
1,417,064	-				-0.4
1,417,064	-				+2.5
1,417,075	+				+0.0
1,417,075	+				+0.8
1,417,167	+		GFF4491	0.20	+1.5
1,417,167	+		GFF4491	0.20	-0.4
1,417,167	+		GFF4491	0.20	+0.1
1,417,168	-		GFF4491	0.20	-0.5
1,417,276	+		GFF4491	0.43	+0.0
1,417,276	+		GFF4491	0.43	-0.5
1,417,277	-		GFF4491	0.43	+1.1
1,417,294	+		GFF4491	0.46	+0.1
1,417,294	+		GFF4491	0.46	-0.1
1,417,295	-		GFF4491	0.47	+1.9
1,417,295	-		GFF4491	0.47	+0.9
1,417,295	-		GFF4491	0.47	+0.9
1,417,295	-		GFF4491	0.47	+0.5
1,417,295	-		GFF4491	0.47	+0.6
1,417,295	-		GFF4491	0.47	-0.6
1,417,295	-		GFF4491	0.47	+0.1
1,417,295	-		GFF4491	0.47	+0.2
1,417,295	-		GFF4491	0.47	-0.5
1,417,321	+		GFF4491	0.52	+0.1
1,417,321	+		GFF4491	0.52	-0.3
1,417,321	+		GFF4491	0.52	+0.7
1,417,322	-		GFF4491	0.52	+0.2
1,417,374	+		GFF4491	0.63	-0.1
1,417,381	+		GFF4491	0.65	+0.9
1,417,381	+		GFF4491	0.65	+0.0
1,417,381	+		GFF4491	0.65	-0.5
1,417,567	-				-1.7
1,417,567	-				+0.3
1,417,597	-				-0.0
1,417,709	-				+0.0
1,417,889	+				+0.3
1,417,890	-				+0.5
1,417,890	-				+0.0