Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4348

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,278,961	+		GFF4347	0.47	-0.0
1,278,961	+		GFF4347	0.47	+0.3
1,278,961	+		GFF4347	0.47	+0.5
1,278,961	+		GFF4347	0.47	+0.4
1,278,961	+		GFF4347	0.47	-0.1
1,278,961	+		GFF4347	0.47	-0.4
1,278,961	+		GFF4347	0.47	+1.5
1,278,961	+		GFF4347	0.47	-0.1
1,278,962	-		GFF4347	0.47	-0.1
1,278,962	-		GFF4347	0.47	+1.2
1,278,962	-		GFF4347	0.47	-0.5
1,278,962	-		GFF4347	0.47	-0.2
1,278,962	-		GFF4347	0.47	+0.2
1,278,967	+		GFF4347	0.48	+0.5
1,278,967	+		GFF4347	0.48	+0.4
1,278,967	+		GFF4347	0.48	+0.8
1,278,967	+		GFF4347	0.48	-0.2
1,278,967	+		GFF4347	0.48	-1.5
1,278,968	-		GFF4347	0.48	+0.6
1,278,968	-		GFF4347	0.48	+0.3
1,278,968	-		GFF4347	0.48	-0.3
1,278,968	-		GFF4347	0.48	+0.0
1,278,968	-		GFF4347	0.48	-0.4
1,279,805	+		GFF4348	0.26	+0.2
1,279,806	-		GFF4348	0.27	+0.3
1,279,832	+		GFF4348	0.29	-0.5
1,279,832	+		GFF4348	0.29	-0.3
1,279,832	+		GFF4348	0.29	+0.3
1,279,833	-		GFF4348	0.29	+0.1
1,279,844	+		GFF4348	0.30	+0.5
1,279,845	-		GFF4348	0.30	+0.6
1,279,985	+		GFF4348	0.43	+0.1
1,279,985	+		GFF4348	0.43	+0.1
1,279,986	-		GFF4348	0.43	+0.6
1,279,986	-		GFF4348	0.43	+1.1
1,280,021	+		GFF4348	0.46	+1.6
1,280,022	-		GFF4348	0.46	+0.1
1,280,022	-		GFF4348	0.46	-0.0
1,280,623	+				-0.8
1,280,624	-				-0.2
1,280,624	-				+0.3
1,280,624	-				-0.4
1,280,635	+				+0.0
1,280,635	+				+0.0
1,280,716	+		GFF4349	0.11	+0.6
1,280,717	-		GFF4349	0.12	+1.6
1,280,809	+		GFF4349	0.23	+0.4
1,280,809	+		GFF4349	0.23	+0.2
1,280,809	+		GFF4349	0.23	-1.1
1,280,810	-		GFF4349	0.23	+0.2
1,280,810	-		GFF4349	0.23	+0.0
1,281,022	+		GFF4349	0.49	-0.5
1,281,022	+		GFF4349	0.49	-0.5
1,281,023	-		GFF4349	0.49	+0.2
1,281,611	+		GFF4350	0.29	+0.2
1,281,611	+		GFF4350	0.29	-0.2
1,281,611	+		GFF4350	0.29	-0.3
1,281,611	+		GFF4350	0.29	+0.2
1,281,611	+		GFF4350	0.29	+0.3
1,281,611	+		GFF4350	0.29	-0.4
1,281,612	-		GFF4350	0.29	-0.1
1,281,612	-		GFF4350	0.29	+0.1
1,281,612	-		GFF4350	0.29	+0.3
1,281,612	-		GFF4350	0.29	-0.5
1,281,612	-		GFF4350	0.29	-0.0
1,281,612	-		GFF4350	0.29	+0.2