Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF415

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
84,369	+		GFF414	0.66	+1.1
84,370	-		GFF414	0.66	-0.3
84,586	-		GFF414	0.75	+0.9
84,608	+		GFF414	0.76	-0.2
84,608	+		GFF414	0.76	+0.8
84,618	+		GFF414	0.76	+0.5
84,619	-		GFF414	0.76	-1.3
84,675	+		GFF414	0.78	-0.1
84,675	+		GFF414	0.78	+0.3
84,676	-		GFF414	0.78	+0.5
84,676	-		GFF414	0.78	+0.1
84,810	+		GFF414	0.84	-0.7
84,811	-		GFF414	0.84	+0.9
84,811	-		GFF414	0.84	-0.1
84,858	+		GFF414	0.86	-0.1
84,859	-		GFF414	0.86	+0.1
84,859	-		GFF414	0.86	-0.4
84,859	-		GFF414	0.86	-0.6
85,012	+				-0.3
85,086	+				+0.5
85,191	+				+0.1
85,192	-				+0.4
85,192	-				+0.6
85,192	-				+0.0
85,227	+				-0.4
85,227	+				-0.6
85,227	+				-0.0
85,228	-				-0.2
85,228	-				+0.1
85,653	+		GFF415	0.37	+0.9
86,065	-		GFF415	0.71	+0.4
86,065	-		GFF415	0.71	-0.1
86,065	-		GFF415	0.71	-1.8
86,065	-		GFF415	0.71	+0.4
86,347	-				-1.1
86,347	-				+0.8
86,347	-				+0.2
86,466	-				+0.5
86,598	-		GFF416	0.23	+0.4
86,725	+		GFF416	0.38	-1.7
86,856	-		GFF416	0.54	+0.2
86,856	-		GFF416	0.54	-0.3
86,856	-		GFF416	0.54	-0.5
86,856	-		GFF416	0.54	-1.9
86,996	+		GFF416	0.71	-0.4
86,996	+		GFF416	0.71	-0.3
87,059	+		GFF416	0.79	+0.4
87,059	+		GFF416	0.79	+0.4
87,060	-		GFF416	0.79	+0.1
87,060	-		GFF416	0.79	-0.2
87,219	-				+0.1
87,219	-				-0.1
87,259	+				+0.3
87,259	+				-2.1
87,259	+				-0.1
87,260	-				-0.5
87,260	-				+0.2
87,260	-				+0.3
87,271	+				-1.9
87,301	+				-0.3