Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4109

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,020,621	+		GFF4108	0.24	-0.1
1,020,621	+		GFF4108	0.24	-0.2
1,020,621	+		GFF4108	0.24	-1.4
1,020,621	+		GFF4108	0.24	+0.9
1,020,622	-		GFF4108	0.24	-0.2
1,020,680	+		GFF4108	0.29	+0.1
1,020,680	+		GFF4108	0.29	+0.4
1,020,680	+		GFF4108	0.29	-0.1
1,020,680	+		GFF4108	0.29	-0.0
1,020,684	+		GFF4108	0.29	+1.3
1,020,684	+		GFF4108	0.29	+0.6
1,020,684	+		GFF4108	0.29	-0.2
1,020,684	+		GFF4108	0.29	-0.9
1,020,684	+		GFF4108	0.29	+0.5
1,020,684	+		GFF4108	0.29	+0.5
1,020,685	-		GFF4108	0.29	+0.2
1,020,685	-		GFF4108	0.29	-0.3
1,020,685	-		GFF4108	0.29	-0.1
1,020,685	-		GFF4108	0.29	+0.2
1,020,685	-		GFF4108	0.29	+0.4
1,020,685	-		GFF4108	0.29	-2.1
1,020,685	-		GFF4108	0.29	+1.3
1,020,685	-		GFF4108	0.29	+0.3
1,020,685	-		GFF4108	0.29	+1.0
1,020,685	-		GFF4108	0.29	+0.2
1,020,870	+		GFF4108	0.44	-0.0
1,020,870	+		GFF4108	0.44	-0.3
1,020,871	-		GFF4108	0.45	-0.1
1,020,871	-		GFF4108	0.45	+0.2
1,020,936	+		GFF4108	0.50	+0.6
1,020,937	-		GFF4108	0.50	+0.2
1,020,937	-		GFF4108	0.50	+0.3
1,020,937	-		GFF4108	0.50	+0.9
1,020,937	-		GFF4108	0.50	+0.2
1,020,948	+		GFF4108	0.51	+0.0
1,020,948	+		GFF4108	0.51	-0.3
1,020,948	+		GFF4108	0.51	-0.2
1,020,948	+		GFF4108	0.51	-0.1
1,020,948	+		GFF4108	0.51	+1.1
1,020,948	+		GFF4108	0.51	-0.0
1,020,948	+		GFF4108	0.51	-0.1
1,020,948	+		GFF4108	0.51	+0.2
1,020,948	+		GFF4108	0.51	+0.3
1,020,949	-		GFF4108	0.51	-0.4
1,020,949	-		GFF4108	0.51	-0.0
1,021,051	-		GFF4108	0.59	+0.2
1,021,140	-		GFF4108	0.67	+1.4
1,021,197	+		GFF4108	0.71	+0.9
1,021,197	+		GFF4108	0.71	-0.0
1,021,197	+		GFF4108	0.71	+0.3
1,021,198	-		GFF4108	0.71	-0.6
1,021,198	-		GFF4108	0.71	-0.3
1,021,198	-		GFF4108	0.71	+0.3
1,021,198	-		GFF4108	0.71	+1.5
1,021,198	-		GFF4108	0.71	+0.5
1,021,198	-		GFF4108	0.71	-0.1
1,021,341	+		GFF4108	0.83	-0.1
1,021,341	+		GFF4108	0.83	-0.5
1,021,342	-		GFF4108	0.83	+0.0
1,021,342	-		GFF4108	0.83	+1.7
1,021,342	-		GFF4108	0.83	-0.2
1,021,342	-		GFF4108	0.83	-0.2
1,021,425	+				-0.0
1,021,425	+				+0.7
1,021,425	+				+1.0
1,021,426	-				-0.5
1,021,452	+				-0.1
1,021,452	+				-0.2
1,021,453	-				+0.9
1,021,453	-				+0.6
1,021,453	-				+0.2
1,021,615	+				+0.2
1,021,616	-				+0.2
1,021,616	-				+0.0
1,021,616	-				+0.1
1,021,775	-		GFF4109	0.51	-0.1
1,021,795	+		GFF4109	0.57	-0.9
1,021,795	+		GFF4109	0.57	-0.1
1,021,795	+		GFF4109	0.57	-0.4
1,021,795	+		GFF4109	0.57	-0.0
1,021,795	+		GFF4109	0.57	-0.2
1,021,795	+		GFF4109	0.57	-0.6
1,021,796	-		GFF4109	0.58	-1.1
1,021,908	-				-1.0
1,021,976	+				-1.3
1,022,008	+				+0.0
1,022,038	+				+1.9
1,022,038	+				+0.2
1,022,055	+				-0.2
1,022,055	+				+1.1
1,022,055	+				+0.2
1,022,055	+				-0.0
1,022,055	+				-0.1
1,022,055	+				-0.4
1,022,055	+				+0.3
1,022,055	+				-0.1
1,022,055	+				+0.4
1,022,055	+				-0.5
1,022,055	+				-0.3
1,022,055	+				+0.0
1,022,055	+				-0.1
1,022,056	-				-0.4
1,022,056	-				-0.3
1,022,056	-				-0.0
1,022,056	-				-0.1
1,022,056	-				-0.1
1,022,056	-				+1.2
1,022,056	-				-0.4
1,022,056	-				-0.1
1,022,056	-				+0.3
1,022,094	+		GFF4110	0.17	-1.1
1,022,094	+		GFF4110	0.17	+0.7
1,022,094	+		GFF4110	0.17	+0.1
1,022,095	-		GFF4110	0.17	-0.1
1,022,095	-		GFF4110	0.17	+0.9
1,022,095	-		GFF4110	0.17	+0.9
1,022,095	-		GFF4110	0.17	+0.5
1,022,095	-		GFF4110	0.17	-0.2
1,022,095	-		GFF4110	0.17	+0.0
1,022,095	-		GFF4110	0.17	+0.1
1,022,095	-		GFF4110	0.17	-0.1
1,022,193	+		GFF4110	0.57	+1.1
1,022,319	+				+0.1
1,022,321	+				+1.0
1,022,321	+				-0.1
1,022,322	-				-0.4
1,022,322	-				+0.4
1,022,322	-				-0.3
1,022,322	-				-0.7
1,022,322	-				+0.2
1,022,322	-				-0.6
1,022,322	-				-0.2