Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3977 and GFF3978 overlap by 4 nucleotides GFF3978 and GFF3979 overlap by 8 nucleotides GFF3979 and GFF3980 are separated by 11 nucleotides GFF3980 and GFF3981 overlap by 4 nucleotides
GFF3977 - Cobyrinic acid A,C-diamide synthase, at 892,739 to 894,076
GFF3977
GFF3978 - Periplasmic binding protein, at 894,073 to 894,894
GFF3978
GFF3979 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 894,887 to 895,441
GFF3979
GFF3980 - Vitamin B12 ABC transporter, B12-binding component BtuF, at 895,453 to 896,322
GFF3980
GFF3981 - Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1), at 896,319 to 897,323
GFF3981
Position (kb) 894
895
896 Strain fitness (log2 ratio) -1
0
1 at 893.978 kb on + strand at 893.979 kb on - strand at 894.005 kb on + strand at 894.005 kb on + strand at 894.005 kb on + strand at 894.006 kb on - strand at 894.010 kb on - strand at 894.139 kb on + strand at 894.140 kb on - strand at 894.181 kb on + strand, within GFF3978 at 894.181 kb on + strand, within GFF3978 at 895.657 kb on + strand, within GFF3980 at 895.979 kb on - strand, within GFF3980 at 895.979 kb on - strand, within GFF3980 at 896.104 kb on + strand, within GFF3980 at 896.104 kb on + strand, within GFF3980
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 893,978 + +0.5 893,979 - -0.3 894,005 + -0.4 894,005 + -1.3 894,005 + -1.4 894,006 - -0.6 894,010 - +0.5 894,139 + +0.5 894,140 - -0.5 894,181 + GFF3978 0.13 -0.1 894,181 + GFF3978 0.13 -0.0 895,657 + GFF3980 0.23 -1.3 895,979 - GFF3980 0.60 -0.7 895,979 - GFF3980 0.60 +0.9 896,104 + GFF3980 0.75 -0.1 896,104 + GFF3980 0.75 -1.3
Or see this region's nucleotide sequence