Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3957 and GFF3958 are separated by 44 nucleotides GFF3958 and GFF3959 are separated by 140 nucleotides
GFF3957 - GLUCOSE-FRUCTOSE OXIDOREDUCTASE (EC 1.1.99.28), at 871,505 to 872,668
GFF3957
GFF3958 - Tricarboxylate transport protein TctC, at 872,713 to 873,780
GFF3958
GFF3959 - FIG00986182: hypothetical protein, at 873,921 to 875,276
GFF3959
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1 at 871.929 kb on + strand, within GFF3957 at 871.956 kb on + strand, within GFF3957 at 871.957 kb on - strand, within GFF3957 at 871.957 kb on - strand, within GFF3957 at 872.341 kb on - strand, within GFF3957 at 872.780 kb on + strand at 872.780 kb on + strand at 872.781 kb on - strand at 872.781 kb on - strand at 872.781 kb on - strand at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.083 kb on + strand, within GFF3958 at 873.084 kb on - strand, within GFF3958 at 873.084 kb on - strand, within GFF3958 at 873.087 kb on - strand, within GFF3958 at 873.609 kb on - strand, within GFF3958 at 873.755 kb on + strand at 873.834 kb on - strand at 873.834 kb on - strand at 873.834 kb on - strand at 873.845 kb on + strand at 874.048 kb on + strand at 874.048 kb on + strand at 874.048 kb on + strand at 874.049 kb on - strand at 874.117 kb on + strand, within GFF3959 at 874.117 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.273 kb on + strand, within GFF3959 at 874.274 kb on - strand, within GFF3959 at 874.274 kb on - strand, within GFF3959
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 871,929 + GFF3957 0.36 -0.3 871,956 + GFF3957 0.39 +0.4 871,957 - GFF3957 0.39 +0.2 871,957 - GFF3957 0.39 -0.6 872,341 - GFF3957 0.72 -0.1 872,780 + -0.8 872,780 + -0.3 872,781 - -0.0 872,781 - +0.0 872,781 - +1.0 873,083 + GFF3958 0.35 +0.5 873,083 + GFF3958 0.35 +0.4 873,083 + GFF3958 0.35 -0.1 873,083 + GFF3958 0.35 -0.6 873,084 - GFF3958 0.35 -1.1 873,084 - GFF3958 0.35 -1.0 873,087 - GFF3958 0.35 +0.3 873,609 - GFF3958 0.84 -0.4 873,755 + -0.1 873,834 - +1.2 873,834 - -0.2 873,834 - +0.3 873,845 + -0.2 874,048 + +0.0 874,048 + +0.0 874,048 + -0.1 874,049 - +0.5 874,117 + GFF3959 0.14 -0.2 874,117 + GFF3959 0.14 -0.0 874,273 + GFF3959 0.26 -0.1 874,273 + GFF3959 0.26 -1.9 874,273 + GFF3959 0.26 -0.3 874,274 - GFF3959 0.26 +1.3 874,274 - GFF3959 0.26 -0.2
Or see this region's nucleotide sequence