Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3886 and GFF3887 are separated by 152 nucleotides GFF3887 and GFF3888 overlap by 4 nucleotides GFF3888 and GFF3889 are separated by 11 nucleotides GFF3889 and GFF3890 are separated by 66 nucleotides
GFF3886 - Protein GlcG, at 800,075 to 800,482
GFF3886
GFF3887 - hypothetical protein, at 800,635 to 800,847
GFF3887
GFF3888 - Biopolymer transport protein ExbD/TolR, at 800,844 to 801,257
GFF3888
GFF3889 - MotA/TolQ/ExbB proton channel family protein, at 801,269 to 802,021
GFF3889
GFF3890 - Ferric siderophore transport system, periplasmic binding protein TonB, at 802,088 to 802,810
GFF3890
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.954 kb on + strand at 799.954 kb on + strand at 799.955 kb on - strand at 799.993 kb on + strand at 800.020 kb on + strand at 800.020 kb on + strand at 800.062 kb on + strand at 800.063 kb on - strand at 800.063 kb on - strand at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.480 kb on + strand at 800.481 kb on - strand at 800.520 kb on + strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.681 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.769 kb on - strand, within GFF3887 at 801.043 kb on + strand, within GFF3888 at 801.043 kb on + strand, within GFF3888 at 801.044 kb on - strand, within GFF3888 at 801.342 kb on + strand at 801.540 kb on + strand, within GFF3889 at 802.062 kb on - strand at 802.062 kb on - strand at 802.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 799,904 + -0.2 799,904 + -0.4 799,904 + -1.0 799,904 + +0.5 799,904 + -0.0 799,904 + -0.7 799,905 - +0.3 799,905 - +0.8 799,905 - +0.7 799,905 - +0.3 799,905 - -1.1 799,954 + +0.7 799,954 + +0.7 799,955 - +0.2 799,993 + +0.4 800,020 + -0.3 800,020 + -0.0 800,062 + -0.0 800,063 - -0.5 800,063 - -0.3 800,297 + GFF3886 0.54 +0.1 800,297 + GFF3886 0.54 -0.4 800,297 + GFF3886 0.54 -1.0 800,297 + GFF3886 0.54 +1.8 800,298 - GFF3886 0.55 -0.1 800,298 - GFF3886 0.55 +0.1 800,480 + -0.4 800,481 - +0.9 800,520 + -0.2 800,637 - +0.7 800,637 - -1.1 800,637 - -0.4 800,637 - +1.2 800,681 + GFF3887 0.22 +0.2 800,768 + GFF3887 0.62 +0.7 800,768 + GFF3887 0.62 -0.2 800,769 - GFF3887 0.63 -0.5 801,043 + GFF3888 0.48 -2.4 801,043 + GFF3888 0.48 -1.9 801,044 - GFF3888 0.48 -2.8 801,342 + -1.1 801,540 + GFF3889 0.36 -1.1 802,062 - +0.2 802,062 - -0.6 802,089 + -0.5
Or see this region's nucleotide sequence