Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF385

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF384 and GFF385 are separated by 24 nucleotidesGFF385 and GFF386 are separated by 34 nucleotides GFF384 - Bll5482 protein, at 48,133 to 49,275 GFF384 GFF385 - B12 binding domain / kinase domain / Methylmalonyl-CoA mutase (EC 5.4.99.2), at 49,300 to 52,593 GFF385 GFF386 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 52,628 to 53,518 GFF386 Position (kb) 49 50 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 48.500 kb on - strand, within GFF384at 49.075 kb on + strand, within GFF384at 49.075 kb on + strand, within GFF384at 49.075 kb on + strand, within GFF384at 49.076 kb on - strand, within GFF384at 49.076 kb on - strand, within GFF384at 49.076 kb on - strand, within GFF384at 49.186 kb on + strandat 49.186 kb on + strandat 49.186 kb on + strandat 49.187 kb on - strandat 49.187 kb on - strandat 49.187 kb on - strandat 49.593 kb on - strandat 49.593 kb on - strandat 49.619 kb on + strandat 49.619 kb on + strandat 49.619 kb on + strandat 49.620 kb on - strandat 49.907 kb on + strand, within GFF385at 49.907 kb on + strand, within GFF385at 49.908 kb on - strand, within GFF385at 49.998 kb on - strand, within GFF385at 50.087 kb on + strand, within GFF385at 50.087 kb on + strand, within GFF385at 50.088 kb on - strand, within GFF385at 50.088 kb on - strand, within GFF385at 50.165 kb on + strand, within GFF385at 50.165 kb on + strand, within GFF385at 50.165 kb on + strand, within GFF385at 50.165 kb on + strand, within GFF385at 50.165 kb on + strand, within GFF385at 50.166 kb on - strand, within GFF385at 50.166 kb on - strand, within GFF385at 50.166 kb on - strand, within GFF385at 50.267 kb on + strand, within GFF385at 50.267 kb on + strand, within GFF385at 50.268 kb on - strand, within GFF385at 50.298 kb on - strand, within GFF385at 50.591 kb on + strand, within GFF385at 50.592 kb on - strand, within GFF385at 50.651 kb on + strand, within GFF385at 50.652 kb on - strand, within GFF385at 50.652 kb on - strand, within GFF385at 50.684 kb on + strand, within GFF385at 50.684 kb on + strand, within GFF385at 50.843 kb on + strand, within GFF385at 50.844 kb on + strand, within GFF385at 50.906 kb on + strand, within GFF385at 50.906 kb on + strand, within GFF385at 50.907 kb on - strand, within GFF385at 50.907 kb on - strand, within GFF385at 50.999 kb on + strand, within GFF385at 50.999 kb on + strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.000 kb on - strand, within GFF385at 51.014 kb on + strand, within GFF385at 51.215 kb on + strand, within GFF385at 51.215 kb on + strand, within GFF385at 51.248 kb on + strand, within GFF385at 51.248 kb on + strand, within GFF385at 51.249 kb on - strand, within GFF385at 51.371 kb on + strand, within GFF385at 51.371 kb on + strand, within GFF385at 51.372 kb on - strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.605 kb on + strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.606 kb on - strand, within GFF385at 51.770 kb on + strand, within GFF385at 51.770 kb on + strand, within GFF385at 51.770 kb on + strand, within GFF385at 51.770 kb on + strand, within GFF385at 51.770 kb on - strand, within GFF385at 51.771 kb on - strand, within GFF385at 51.771 kb on - strand, within GFF385at 51.771 kb on - strand, within GFF385at 51.771 kb on - strand, within GFF385at 52.125 kb on - strand, within GFF385at 52.208 kb on + strand, within GFF385at 52.208 kb on + strand, within GFF385at 52.208 kb on + strand, within GFF385at 52.209 kb on - strand, within GFF385at 52.209 kb on - strand, within GFF385at 52.226 kb on + strand, within GFF385at 52.227 kb on - strand, within GFF385at 52.328 kb on + strandat 52.328 kb on + strandat 52.328 kb on + strandat 52.328 kb on + strandat 52.328 kb on + strandat 52.328 kb on + strandat 52.328 kb on + strandat 52.329 kb on - strandat 52.329 kb on - strandat 52.329 kb on - strandat 52.329 kb on - strandat 52.329 kb on - strandat 52.337 kb on + strandat 52.337 kb on + strandat 52.338 kb on - strandat 52.358 kb on + strandat 52.358 kb on + strandat 52.359 kb on - strandat 52.359 kb on - strandat 52.553 kb on + strandat 52.553 kb on + strandat 52.553 kb on + strandat 52.554 kb on - strandat 52.554 kb on - strandat 52.571 kb on + strandat 52.572 kb on - strandat 52.804 kb on - strand, within GFF386at 52.815 kb on + strand, within GFF386at 52.815 kb on + strand, within GFF386at 52.816 kb on - strand, within GFF386at 52.816 kb on - strand, within GFF386at 53.059 kb on - strand, within GFF386at 53.059 kb on - strand, within GFF386at 53.124 kb on + strand, within GFF386at 53.124 kb on + strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.125 kb on - strand, within GFF386at 53.265 kb on + strand, within GFF386at 53.280 kb on + strand, within GFF386at 53.280 kb on + strand, within GFF386at 53.281 kb on - strand, within GFF386at 53.281 kb on - strand, within GFF386at 53.579 kb on + strandat 53.589 kb on + strandat 53.589 kb on + strandat 53.589 kb on + strandat 53.589 kb on + strandat 53.589 kb on + strandat 53.590 kb on - strandat 53.590 kb on - strandat 53.592 kb on + strandat 53.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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48,500 - GFF384 0.32 +0.1
49,075 + GFF384 0.82 -0.1
49,075 + GFF384 0.82 +0.2
49,075 + GFF384 0.82 -0.1
49,076 - GFF384 0.83 +0.2
49,076 - GFF384 0.83 -1.4
49,076 - GFF384 0.83 +0.2
49,186 + +0.4
49,186 + +0.4
49,186 + +1.0
49,187 - +0.6
49,187 - +0.3
49,187 - -0.7
49,593 - -1.4
49,593 - +0.1
49,619 + -0.4
49,619 + -0.4
49,619 + -0.2
49,620 - +0.6
49,907 + GFF385 0.18 -0.8
49,907 + GFF385 0.18 -0.5
49,908 - GFF385 0.18 -1.0
49,998 - GFF385 0.21 +0.4
50,087 + GFF385 0.24 -2.6
50,087 + GFF385 0.24 -0.9
50,088 - GFF385 0.24 -1.0
50,088 - GFF385 0.24 -1.5
50,165 + GFF385 0.26 -1.7
50,165 + GFF385 0.26 -0.1
50,165 + GFF385 0.26 -1.4
50,165 + GFF385 0.26 -2.3
50,165 + GFF385 0.26 -0.5
50,166 - GFF385 0.26 -0.4
50,166 - GFF385 0.26 -1.3
50,166 - GFF385 0.26 -0.5
50,267 + GFF385 0.29 -1.3
50,267 + GFF385 0.29 -2.4
50,268 - GFF385 0.29 -0.3
50,298 - GFF385 0.30 -0.8
50,591 + GFF385 0.39 +0.5
50,592 - GFF385 0.39 -1.1
50,651 + GFF385 0.41 -0.6
50,652 - GFF385 0.41 -0.5
50,652 - GFF385 0.41 -0.0
50,684 + GFF385 0.42 -0.7
50,684 + GFF385 0.42 -0.9
50,843 + GFF385 0.47 -1.3
50,844 + GFF385 0.47 -0.1
50,906 + GFF385 0.49 -0.6
50,906 + GFF385 0.49 -0.3
50,907 - GFF385 0.49 -1.4
50,907 - GFF385 0.49 -0.6
50,999 + GFF385 0.52 -1.5
50,999 + GFF385 0.52 -0.9
51,000 - GFF385 0.52 -0.7
51,000 - GFF385 0.52 -0.5
51,000 - GFF385 0.52 +0.3
51,000 - GFF385 0.52 -0.8
51,000 - GFF385 0.52 -0.8
51,000 - GFF385 0.52 -1.2
51,014 + GFF385 0.52 -0.7
51,215 + GFF385 0.58 -1.4
51,215 + GFF385 0.58 -0.7
51,248 + GFF385 0.59 -0.8
51,248 + GFF385 0.59 -0.0
51,249 - GFF385 0.59 -2.3
51,371 + GFF385 0.63 -0.7
51,371 + GFF385 0.63 -0.3
51,372 - GFF385 0.63 -1.9
51,605 + GFF385 0.70 -0.5
51,605 + GFF385 0.70 -1.0
51,605 + GFF385 0.70 -2.4
51,605 + GFF385 0.70 +0.2
51,605 + GFF385 0.70 -1.0
51,605 + GFF385 0.70 +0.3
51,605 + GFF385 0.70 -0.6
51,605 + GFF385 0.70 -1.3
51,606 - GFF385 0.70 -1.1
51,606 - GFF385 0.70 -1.9
51,606 - GFF385 0.70 -1.4
51,606 - GFF385 0.70 +0.9
51,606 - GFF385 0.70 +0.2
51,606 - GFF385 0.70 -1.3
51,606 - GFF385 0.70 -0.4
51,606 - GFF385 0.70 -0.2
51,770 + GFF385 0.75 -1.1
51,770 + GFF385 0.75 -0.1
51,770 + GFF385 0.75 -0.9
51,770 + GFF385 0.75 -1.2
51,770 - GFF385 0.75 -0.3
51,771 - GFF385 0.75 -0.7
51,771 - GFF385 0.75 +0.2
51,771 - GFF385 0.75 +0.5
51,771 - GFF385 0.75 -0.8
52,125 - GFF385 0.86 -0.3
52,208 + GFF385 0.88 +0.5
52,208 + GFF385 0.88 -1.2
52,208 + GFF385 0.88 -1.1
52,209 - GFF385 0.88 -1.6
52,209 - GFF385 0.88 -1.2
52,226 + GFF385 0.89 -0.6
52,227 - GFF385 0.89 +0.0
52,328 + -1.1
52,328 + -0.6
52,328 + -0.9
52,328 + -1.3
52,328 + -1.1
52,328 + +0.9
52,328 + +1.5
52,329 - -0.7
52,329 - -1.3
52,329 - -1.4
52,329 - -0.7
52,329 - -0.1
52,337 + -1.5
52,337 + -0.5
52,338 - -0.8
52,358 + -0.7
52,358 + -0.7
52,359 - -1.3
52,359 - -0.9
52,553 + +0.6
52,553 + -0.6
52,553 + -0.1
52,554 - -0.5
52,554 - -1.7
52,571 + +0.7
52,572 - -0.1
52,804 - GFF386 0.20 -0.3
52,815 + GFF386 0.21 +0.2
52,815 + GFF386 0.21 -1.0
52,816 - GFF386 0.21 -0.5
52,816 - GFF386 0.21 -0.2
53,059 - GFF386 0.48 +0.4
53,059 - GFF386 0.48 -0.6
53,124 + GFF386 0.56 +1.6
53,124 + GFF386 0.56 -0.3
53,125 - GFF386 0.56 +0.3
53,125 - GFF386 0.56 -0.6
53,125 - GFF386 0.56 -1.1
53,125 - GFF386 0.56 +0.4
53,125 - GFF386 0.56 -0.3
53,125 - GFF386 0.56 +0.3
53,265 + GFF386 0.71 -0.0
53,280 + GFF386 0.73 -0.1
53,280 + GFF386 0.73 -0.1
53,281 - GFF386 0.73 -1.3
53,281 - GFF386 0.73 -0.2
53,579 + -0.1
53,589 + -0.1
53,589 + +0.7
53,589 + -0.4
53,589 + +0.3
53,589 + +0.5
53,590 - -0.0
53,590 - +0.7
53,592 + -0.4
53,593 - -0.3

Or see this region's nucleotide sequence