Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3611 and GFF3612 are separated by 246 nucleotides
GFF3611 - putative exported protein, at 497,813 to 498,793
GFF3611
GFF3612 - Outer membrane autotransporter barrel, at 499,040 to 500,776
GFF3612
Position (kb) 499
500
501 Strain fitness (log2 ratio) -1
0
1
2 at 498.080 kb on + strand, within GFF3611 at 498.080 kb on + strand, within GFF3611 at 498.146 kb on + strand, within GFF3611 at 498.285 kb on - strand, within GFF3611 at 498.371 kb on + strand, within GFF3611 at 498.372 kb on - strand, within GFF3611 at 498.841 kb on + strand at 498.842 kb on - strand at 498.842 kb on - strand at 498.842 kb on - strand at 498.914 kb on + strand at 498.915 kb on - strand at 498.983 kb on + strand at 498.983 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.996 kb on - strand at 499.078 kb on - strand at 499.263 kb on - strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.388 kb on + strand, within GFF3612 at 499.389 kb on - strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612 at 500.151 kb on - strand, within GFF3612 at 500.160 kb on - strand, within GFF3612 at 500.354 kb on + strand, within GFF3612 at 500.354 kb on + strand, within GFF3612 at 500.429 kb on + strand, within GFF3612 at 500.429 kb on + strand, within GFF3612 at 500.430 kb on - strand, within GFF3612 at 500.484 kb on + strand, within GFF3612 at 500.537 kb on + strand, within GFF3612 at 500.537 kb on + strand, within GFF3612 at 500.606 kb on + strand at 500.607 kb on - strand at 500.666 kb on + strand at 500.666 kb on + strand at 500.699 kb on + strand at 500.709 kb on - strand at 500.771 kb on + strand at 500.772 kb on - strand at 500.935 kb on + strand at 501.167 kb on - strand at 501.205 kb on + strand at 501.206 kb on - strand at 501.232 kb on + strand at 501.232 kb on + strand at 501.236 kb on - strand at 501.236 kb on - strand at 501.314 kb on - strand at 501.490 kb on + strand at 501.693 kb on + strand at 501.694 kb on - strand at 501.694 kb on - strand at 501.736 kb on + strand at 501.737 kb on - strand at 501.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 498,080 + GFF3611 0.27 -0.2 498,080 + GFF3611 0.27 +1.1 498,146 + GFF3611 0.34 +0.5 498,285 - GFF3611 0.48 -0.0 498,371 + GFF3611 0.57 -0.1 498,372 - GFF3611 0.57 +0.5 498,841 + -0.3 498,842 - -0.3 498,842 - -0.1 498,842 - -0.0 498,914 + -0.8 498,915 - +0.5 498,983 + -0.0 498,983 + +0.7 498,995 + -0.1 498,995 + -1.4 498,995 + -0.2 498,995 + +0.9 498,995 + -0.5 498,996 - -0.3 499,078 - -0.6 499,263 - GFF3612 0.13 -0.0 499,352 + GFF3612 0.18 +0.2 499,352 + GFF3612 0.18 -1.1 499,352 + GFF3612 0.18 +0.1 499,352 + GFF3612 0.18 -0.9 499,352 + GFF3612 0.18 +0.9 499,352 + GFF3612 0.18 -0.1 499,352 + GFF3612 0.18 +0.0 499,353 - GFF3612 0.18 -0.1 499,353 - GFF3612 0.18 -0.7 499,353 - GFF3612 0.18 -1.1 499,388 + GFF3612 0.20 +0.5 499,389 - GFF3612 0.20 +0.4 499,481 + GFF3612 0.25 +0.1 499,481 + GFF3612 0.25 -0.3 499,481 + GFF3612 0.25 -0.7 499,482 - GFF3612 0.25 -0.1 499,482 - GFF3612 0.25 +0.5 499,482 - GFF3612 0.25 +0.0 499,482 - GFF3612 0.25 +2.1 499,482 - GFF3612 0.25 -0.0 499,577 - GFF3612 0.31 -0.2 499,577 - GFF3612 0.31 -0.7 499,577 - GFF3612 0.31 +0.2 500,151 - GFF3612 0.64 +0.5 500,160 - GFF3612 0.64 -0.2 500,354 + GFF3612 0.76 -1.3 500,354 + GFF3612 0.76 +0.0 500,429 + GFF3612 0.80 -0.3 500,429 + GFF3612 0.80 -1.1 500,430 - GFF3612 0.80 -0.6 500,484 + GFF3612 0.83 -0.7 500,537 + GFF3612 0.86 -0.4 500,537 + GFF3612 0.86 -0.7 500,606 + +0.1 500,607 - +0.7 500,666 + +0.4 500,666 + +0.4 500,699 + -1.0 500,709 - +0.0 500,771 + -0.3 500,772 - +0.2 500,935 + -0.6 501,167 - +0.3 501,205 + +1.0 501,206 - -0.1 501,232 + +0.1 501,232 + -0.3 501,236 - +0.2 501,236 - -0.5 501,314 - +0.0 501,490 + +0.1 501,693 + -0.9 501,694 - -1.0 501,694 - +0.5 501,736 + +1.9 501,737 - -0.2 501,737 - -0.0
Or see this region's nucleotide sequence