Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF34

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
30,155	+				-0.6
30,156	-		GFF33	0.10	-1.0
30,326	+		GFF33	0.27	-0.7
30,332	+		GFF33	0.27	-0.2
30,333	-		GFF33	0.27	+0.3
30,428	+		GFF33	0.37	+0.1
30,429	-		GFF33	0.37	+0.6
30,570	-		GFF33	0.51	+0.8
30,570	-		GFF33	0.51	-0.3
30,893	+		GFF33	0.83	+0.5
30,893	+		GFF33	0.83	-0.3
31,720	+		GFF34	0.68	-0.0
31,720	+		GFF34	0.68	-0.1
31,721	-		GFF34	0.69	-0.0
31,721	-		GFF34	0.69	+0.2
31,721	-		GFF34	0.69	-0.5
31,753	+		GFF34	0.72	-0.4
31,954	+				-0.3
31,954	+				+2.5
31,954	+				-0.3
31,954	+				+0.0
31,954	+				+0.4
31,954	+				+0.2
31,955	-				-0.1
31,955	-				+0.9
31,955	-				-0.8
32,062	-				-0.4
32,253	+		GFF35	0.13	-0.4
32,253	+		GFF35	0.13	-1.1
32,457	+		GFF35	0.41	+0.9
32,682	+		GFF35	0.73	-1.5
32,737	-		GFF35	0.80	-0.7
33,000	-				+0.4