Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3317 and GFF3318 are separated by 81 nucleotides GFF3318 and GFF3319 overlap by 1 nucleotides GFF3319 and GFF3320 overlap by 23 nucleotides
GFF3317 - conserved hypothetical membrane protein, paralogue of Y20848, at 203,493 to 204,689
GFF3317
GFF3318 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 204,771 to 205,877
GFF3318
GFF3319 - S-formylglutathione hydrolase (EC 3.1.2.12), at 205,877 to 206,719
GFF3319
GFF3320 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 206,697 to 207,383
GFF3320
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 203.796 kb on + strand, within GFF3317 at 203.817 kb on + strand, within GFF3317 at 204.189 kb on + strand, within GFF3317 at 204.189 kb on + strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.190 kb on - strand, within GFF3317 at 204.232 kb on - strand, within GFF3317 at 204.243 kb on + strand, within GFF3317 at 204.255 kb on + strand, within GFF3317 at 204.255 kb on + strand, within GFF3317 at 204.256 kb on - strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.363 kb on + strand, within GFF3317 at 204.456 kb on + strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.457 kb on - strand, within GFF3317 at 204.576 kb on + strand at 204.576 kb on + strand at 204.576 kb on + strand at 204.576 kb on + strand at 204.715 kb on + strand at 204.716 kb on - strand at 204.716 kb on - strand at 204.900 kb on + strand, within GFF3318 at 204.901 kb on - strand, within GFF3318 at 204.903 kb on + strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.200 kb on + strand, within GFF3318 at 205.201 kb on - strand, within GFF3318 at 205.266 kb on + strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.543 kb on - strand, within GFF3318 at 205.543 kb on - strand, within GFF3318 at 205.755 kb on + strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.931 kb on + strand at 205.932 kb on - strand at 205.932 kb on - strand at 206.025 kb on - strand, within GFF3319 at 206.193 kb on - strand, within GFF3319 at 206.373 kb on - strand, within GFF3319 at 206.448 kb on - strand, within GFF3319 at 206.643 kb on - strand at 206.643 kb on - strand at 206.654 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.658 kb on - strand at 206.862 kb on + strand, within GFF3320 at 206.862 kb on + strand, within GFF3320 at 206.862 kb on + strand, within GFF3320 at 206.863 kb on - strand, within GFF3320 at 206.863 kb on - strand, within GFF3320
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 203,796 + GFF3317 0.25 +0.4 203,817 + GFF3317 0.27 -1.5 204,189 + GFF3317 0.58 -0.8 204,189 + GFF3317 0.58 +0.5 204,190 - GFF3317 0.58 -1.1 204,190 - GFF3317 0.58 +0.2 204,190 - GFF3317 0.58 -1.9 204,232 - GFF3317 0.62 +1.3 204,243 + GFF3317 0.63 -0.1 204,255 + GFF3317 0.64 +1.0 204,255 + GFF3317 0.64 +0.3 204,256 - GFF3317 0.64 +0.1 204,363 + GFF3317 0.73 -0.2 204,363 + GFF3317 0.73 +0.5 204,363 + GFF3317 0.73 -1.0 204,456 + GFF3317 0.80 -2.3 204,457 - GFF3317 0.81 -0.1 204,457 - GFF3317 0.81 -0.1 204,457 - GFF3317 0.81 -1.1 204,576 + -0.4 204,576 + -0.0 204,576 + -0.2 204,576 + -0.1 204,715 + -0.0 204,716 - -0.1 204,716 - -0.6 204,900 + GFF3318 0.12 -0.4 204,901 - GFF3318 0.12 +0.9 204,903 + GFF3318 0.12 -0.4 204,904 - GFF3318 0.12 -0.7 204,904 - GFF3318 0.12 -0.8 204,904 - GFF3318 0.12 -0.0 205,032 + GFF3318 0.24 +1.2 205,032 + GFF3318 0.24 -0.1 205,173 + GFF3318 0.36 +0.1 205,173 + GFF3318 0.36 -0.7 205,173 + GFF3318 0.36 -0.2 205,173 + GFF3318 0.36 -0.4 205,174 - GFF3318 0.36 +0.3 205,174 - GFF3318 0.36 +0.6 205,200 + GFF3318 0.39 -0.1 205,201 - GFF3318 0.39 -0.7 205,266 + GFF3318 0.45 +1.7 205,267 - GFF3318 0.45 -0.2 205,267 - GFF3318 0.45 +0.6 205,542 + GFF3318 0.70 -0.4 205,542 + GFF3318 0.70 -2.6 205,542 + GFF3318 0.70 +0.1 205,543 - GFF3318 0.70 +0.1 205,543 - GFF3318 0.70 -0.0 205,755 + GFF3318 0.89 -0.2 205,756 - GFF3318 0.89 -0.1 205,756 - GFF3318 0.89 -0.1 205,756 - GFF3318 0.89 +2.4 205,931 + +0.9 205,932 - +0.2 205,932 - -0.4 206,025 - GFF3319 0.18 -0.0 206,193 - GFF3319 0.37 +0.2 206,373 - GFF3319 0.59 +0.0 206,448 - GFF3319 0.68 +0.5 206,643 - -0.5 206,643 - +0.3 206,654 + -0.4 206,657 + +0.4 206,657 + -0.7 206,657 + +0.2 206,657 + +0.7 206,658 - -0.7 206,862 + GFF3320 0.24 +0.6 206,862 + GFF3320 0.24 +0.5 206,862 + GFF3320 0.24 -0.1 206,863 - GFF3320 0.24 +0.3 206,863 - GFF3320 0.24 -0.1
Or see this region's nucleotide sequence