Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3282 and GFF3283 are separated by 2 nucleotides GFF3283 and GFF3284 are separated by 11 nucleotides GFF3284 and GFF3285 are separated by 33 nucleotides
GFF3282 - Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8), at 166,615 to 168,234
GFF3282
GFF3283 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 168,237 to 170,402
GFF3283
GFF3284 - 2,4'-dihydroxyacetophenone dioxygenase, at 170,414 to 170,947
GFF3284
GFF3285 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 170,981 to 171,751
GFF3285
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -1
0
1 at 167.582 kb on + strand, within GFF3282 at 168.228 kb on + strand at 168.228 kb on + strand at 168.228 kb on + strand at 168.229 kb on - strand at 168.329 kb on - strand at 168.685 kb on + strand, within GFF3283 at 168.844 kb on + strand, within GFF3283 at 169.591 kb on + strand, within GFF3283 at 170.222 kb on - strand at 170.288 kb on - strand at 170.464 kb on - strand at 170.488 kb on - strand, within GFF3284 at 170.488 kb on - strand, within GFF3284 at 170.488 kb on - strand, within GFF3284 at 170.716 kb on - strand, within GFF3284 at 170.826 kb on + strand, within GFF3284 at 170.826 kb on + strand, within GFF3284 at 170.827 kb on - strand, within GFF3284 at 170.827 kb on - strand, within GFF3284 at 170.862 kb on + strand, within GFF3284 at 170.863 kb on - strand, within GFF3284 at 170.863 kb on - strand, within GFF3284
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 167,582 + GFF3282 0.60 -0.3 168,228 + -0.1 168,228 + -0.6 168,228 + +0.0 168,229 - +0.2 168,329 - -0.2 168,685 + GFF3283 0.21 -0.3 168,844 + GFF3283 0.28 -0.3 169,591 + GFF3283 0.63 -0.2 170,222 - +0.3 170,288 - -0.1 170,464 - +0.2 170,488 - GFF3284 0.14 -0.9 170,488 - GFF3284 0.14 +0.1 170,488 - GFF3284 0.14 -1.0 170,716 - GFF3284 0.57 +0.2 170,826 + GFF3284 0.77 +0.0 170,826 + GFF3284 0.77 -1.1 170,827 - GFF3284 0.77 +0.4 170,827 - GFF3284 0.77 +0.5 170,862 + GFF3284 0.84 +0.1 170,863 - GFF3284 0.84 +0.4 170,863 - GFF3284 0.84 -0.4
Or see this region's nucleotide sequence