Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3140 and GFF3141 overlap by 4 nucleotides GFF3141 and GFF3142 are separated by 215 nucleotides GFF3142 and GFF3143 overlap by 4 nucleotides GFF3143 and GFF3144 overlap by 4 nucleotides
GFF3140 - IncF plasmid conjugative transfer pilus assembly protein TraW, at 19,233 to 19,883
GFF3140
GFF3141 - hypothetical protein, at 19,880 to 20,110
GFF3141
GFF3142 - Conjugative signal peptidase TrhF, at 20,326 to 20,937
GFF3142
GFF3143 - hypothetical protein, at 20,934 to 21,296
GFF3143
GFF3144 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 21,293 to 23,875
GFF3144
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 19.342 kb on + strand, within GFF3140 at 19.343 kb on - strand, within GFF3140 at 19.343 kb on - strand, within GFF3140 at 19.343 kb on - strand, within GFF3140 at 19.582 kb on + strand, within GFF3140 at 19.583 kb on - strand, within GFF3140 at 19.583 kb on - strand, within GFF3140 at 20.064 kb on + strand, within GFF3141 at 20.065 kb on - strand, within GFF3141 at 20.065 kb on - strand, within GFF3141 at 20.426 kb on + strand, within GFF3142 at 20.427 kb on - strand, within GFF3142 at 20.429 kb on + strand, within GFF3142 at 20.430 kb on - strand, within GFF3142 at 20.801 kb on + strand, within GFF3142 at 20.801 kb on + strand, within GFF3142 at 21.468 kb on + strand at 21.468 kb on + strand at 21.469 kb on - strand at 21.688 kb on - strand, within GFF3144
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 19,342 + GFF3140 0.17 +0.4 19,343 - GFF3140 0.17 -0.2 19,343 - GFF3140 0.17 -1.7 19,343 - GFF3140 0.17 -2.5 19,582 + GFF3140 0.54 +0.6 19,583 - GFF3140 0.54 +1.0 19,583 - GFF3140 0.54 +0.5 20,064 + GFF3141 0.80 -0.1 20,065 - GFF3141 0.80 -0.5 20,065 - GFF3141 0.80 +1.1 20,426 + GFF3142 0.16 +0.9 20,427 - GFF3142 0.17 +0.9 20,429 + GFF3142 0.17 +0.5 20,430 - GFF3142 0.17 +0.1 20,801 + GFF3142 0.78 -0.1 20,801 + GFF3142 0.78 +0.3 21,468 + -0.4 21,468 + +0.0 21,469 - +0.3 21,688 - GFF3144 0.15 -0.2
Or see this region's nucleotide sequence