Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3068 and GFF3069 are separated by 85 nucleotides GFF3069 and GFF3070 overlap by 4 nucleotides GFF3070 and GFF3071 overlap by 11 nucleotides
GFF3068 - RNA polymerase sigma-54 factor RpoN, at 147,407 to 149,035
GFF3068
GFF3069 - Methyltransferase (EC 2.1.1.-), at 149,121 to 150,449
GFF3069
GFF3070 - FIG00348512: hypothetical protein, at 150,446 to 150,880
GFF3070
GFF3071 - hypothetical protein, at 150,870 to 151,994
GFF3071
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 148.493 kb on + strand, within GFF3068 at 148.493 kb on + strand, within GFF3068 at 148.493 kb on + strand, within GFF3068 at 148.494 kb on - strand, within GFF3068 at 148.494 kb on - strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.769 kb on + strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.770 kb on - strand, within GFF3068 at 148.793 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.805 kb on + strand, within GFF3068 at 148.806 kb on - strand, within GFF3068 at 148.806 kb on - strand, within GFF3068 at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 148.985 kb on + strand at 149.031 kb on + strand at 149.031 kb on + strand at 149.031 kb on + strand at 149.032 kb on - strand at 149.120 kb on + strand at 149.121 kb on - strand at 149.121 kb on - strand at 149.214 kb on + strand at 149.214 kb on + strand at 149.215 kb on - strand at 149.215 kb on - strand at 149.346 kb on + strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.347 kb on - strand, within GFF3069 at 149.547 kb on + strand, within GFF3069 at 149.547 kb on + strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.548 kb on - strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.580 kb on + strand, within GFF3069 at 149.733 kb on + strand, within GFF3069 at 149.734 kb on - strand, within GFF3069 at 150.262 kb on + strand, within GFF3069 at 150.285 kb on + strand, within GFF3069 at 150.609 kb on - strand, within GFF3070 at 150.881 kb on - strand at 151.122 kb on + strand, within GFF3071 at 151.122 kb on + strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.123 kb on - strand, within GFF3071 at 151.308 kb on + strand, within GFF3071 at 151.308 kb on + strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.309 kb on - strand, within GFF3071 at 151.309 kb on - strand, within GFF3071
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 148,493 + GFF3068 0.67 -0.5 148,493 + GFF3068 0.67 -0.9 148,493 + GFF3068 0.67 -0.3 148,494 - GFF3068 0.67 -0.1 148,494 - GFF3068 0.67 -0.5 148,769 + GFF3068 0.84 +0.3 148,769 + GFF3068 0.84 -1.7 148,769 + GFF3068 0.84 +0.5 148,769 + GFF3068 0.84 +0.0 148,769 + GFF3068 0.84 -0.8 148,769 + GFF3068 0.84 -1.1 148,769 + GFF3068 0.84 -0.7 148,770 - GFF3068 0.84 -0.3 148,770 - GFF3068 0.84 -1.0 148,770 - GFF3068 0.84 -0.6 148,770 - GFF3068 0.84 -0.5 148,770 - GFF3068 0.84 +0.1 148,770 - GFF3068 0.84 -0.4 148,770 - GFF3068 0.84 -0.1 148,770 - GFF3068 0.84 -0.6 148,770 - GFF3068 0.84 -1.4 148,770 - GFF3068 0.84 +1.5 148,770 - GFF3068 0.84 -0.2 148,770 - GFF3068 0.84 +0.1 148,793 + GFF3068 0.85 -0.2 148,805 + GFF3068 0.86 +0.7 148,805 + GFF3068 0.86 -1.0 148,805 + GFF3068 0.86 -0.4 148,805 + GFF3068 0.86 +0.2 148,806 - GFF3068 0.86 +0.0 148,806 - GFF3068 0.86 -0.9 148,985 + +0.1 148,985 + -1.1 148,985 + -0.4 148,985 + +0.1 148,985 + -0.2 149,031 + +0.0 149,031 + +0.2 149,031 + -0.2 149,032 - +0.6 149,120 + +0.1 149,121 - -1.0 149,121 - +0.0 149,214 + -0.2 149,214 + -1.6 149,215 - -0.5 149,215 - -0.1 149,346 + GFF3069 0.17 -0.6 149,347 - GFF3069 0.17 +0.5 149,347 - GFF3069 0.17 +0.5 149,347 - GFF3069 0.17 +0.0 149,547 + GFF3069 0.32 +0.3 149,547 + GFF3069 0.32 +0.0 149,548 - GFF3069 0.32 -0.5 149,548 - GFF3069 0.32 -0.7 149,548 - GFF3069 0.32 -0.3 149,580 + GFF3069 0.35 -0.9 149,580 + GFF3069 0.35 +0.3 149,580 + GFF3069 0.35 -0.2 149,733 + GFF3069 0.46 -0.3 149,734 - GFF3069 0.46 -0.7 150,262 + GFF3069 0.86 +0.0 150,285 + GFF3069 0.88 -0.5 150,609 - GFF3070 0.37 -0.3 150,881 - +0.4 151,122 + GFF3071 0.22 +0.3 151,122 + GFF3071 0.22 -0.3 151,123 - GFF3071 0.22 +0.6 151,123 - GFF3071 0.22 -0.8 151,123 - GFF3071 0.22 +0.4 151,308 + GFF3071 0.39 +0.1 151,308 + GFF3071 0.39 +0.0 151,309 - GFF3071 0.39 +0.1 151,309 - GFF3071 0.39 -0.5 151,309 - GFF3071 0.39 -0.2
Or see this region's nucleotide sequence