Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2970 and GFF2971 are separated by 72 nucleotides GFF2971 and GFF2972 overlap by 4 nucleotides GFF2972 and GFF2973 are separated by 18 nucleotides GFF2973 and GFF2974 overlap by 4 nucleotides
GFF2970 - Enoyl-CoA hydratase/isomerase, at 48,665 to 49,477
GFF2970
GFF2971 - Transcriptional regulator, IclR family, at 49,550 to 50,365
GFF2971
GFF2972 - TRAP-type C4-dicarboxylate transport system, large permease component, at 50,362 to 51,633
GFF2972
GFF2973 - TRAP-type C4-dicarboxylate transport system, small permease component, at 51,652 to 52,158
GFF2973
GFF2974 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 52,155 to 53,147
GFF2974
Position (kb) 50
51
52 Strain fitness (log2 ratio) -2
-1
0
1
2 at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.480 kb on + strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.481 kb on - strand at 49.550 kb on - strand at 49.550 kb on - strand at 49.772 kb on + strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.773 kb on - strand, within GFF2971 at 49.778 kb on + strand, within GFF2971 at 49.778 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.952 kb on + strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.953 kb on - strand, within GFF2971 at 49.988 kb on + strand, within GFF2971 at 50.177 kb on + strand, within GFF2971 at 50.396 kb on + strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.397 kb on - strand at 50.504 kb on + strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 50.940 kb on - strand, within GFF2972 at 51.227 kb on + strand, within GFF2972 at 51.227 kb on + strand, within GFF2972 at 51.228 kb on - strand, within GFF2972 at 51.228 kb on - strand, within GFF2972 at 51.753 kb on - strand, within GFF2973 at 52.219 kb on + strand at 52.439 kb on - strand, within GFF2974 at 52.439 kb on - strand, within GFF2974 at 52.463 kb on - strand, within GFF2974 at 52.477 kb on + strand, within GFF2974 at 52.478 kb on - strand, within GFF2974
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 49,480 + +0.4 49,480 + -0.1 49,480 + +0.1 49,480 + +0.8 49,480 + +0.0 49,480 + -0.3 49,480 + -0.3 49,481 - -0.1 49,481 - -0.5 49,481 - -0.3 49,481 - -1.0 49,550 - -0.4 49,550 - +0.2 49,772 + GFF2971 0.27 -0.1 49,773 - GFF2971 0.27 -0.2 49,773 - GFF2971 0.27 +1.0 49,773 - GFF2971 0.27 +0.5 49,778 + GFF2971 0.28 -2.5 49,778 + GFF2971 0.28 -0.9 49,952 + GFF2971 0.49 -0.3 49,952 + GFF2971 0.49 -0.8 49,952 + GFF2971 0.49 +0.0 49,952 + GFF2971 0.49 +0.0 49,952 + GFF2971 0.49 +0.0 49,952 + GFF2971 0.49 +1.1 49,953 - GFF2971 0.49 +1.4 49,953 - GFF2971 0.49 -0.2 49,953 - GFF2971 0.49 -0.0 49,953 - GFF2971 0.49 -0.1 49,953 - GFF2971 0.49 +0.0 49,953 - GFF2971 0.49 -1.1 49,988 + GFF2971 0.54 +0.4 50,177 + GFF2971 0.77 +2.7 50,396 + +0.3 50,397 - +1.1 50,397 - +0.4 50,397 - +0.3 50,397 - +0.2 50,397 - -0.8 50,397 - -1.6 50,397 - +0.6 50,397 - +0.6 50,397 - +0.3 50,504 + GFF2972 0.11 +1.1 50,940 - GFF2972 0.45 +0.4 50,940 - GFF2972 0.45 -0.6 50,940 - GFF2972 0.45 +0.4 51,227 + GFF2972 0.68 +0.4 51,227 + GFF2972 0.68 +0.5 51,228 - GFF2972 0.68 +0.1 51,228 - GFF2972 0.68 +0.2 51,753 - GFF2973 0.20 +1.3 52,219 + -1.8 52,439 - GFF2974 0.29 +1.0 52,439 - GFF2974 0.29 +1.0 52,463 - GFF2974 0.31 +0.4 52,477 + GFF2974 0.32 -0.6 52,478 - GFF2974 0.33 +0.7
Or see this region's nucleotide sequence