Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2915 and GFF2916 are separated by 2 nucleotides GFF2916 and GFF2917 are separated by 16 nucleotides GFF2917 and GFF2918 are separated by 9 nucleotides GFF2918 and GFF2919 are separated by 129 nucleotides GFF2919 and GFF2920 are separated by 69 nucleotides
GFF2915 - SSU ribosomal protein S3p (S3e), at 3,744 to 4,619
GFF2915
GFF2916 - LSU ribosomal protein L16p (L10e), at 4,622 to 5,038
GFF2916
GFF2917 - LSU ribosomal protein L29p (L35e), at 5,055 to 5,261
GFF2917
GFF2918 - SSU ribosomal protein S17p (S11e), at 5,271 to 5,540
GFF2918
GFF2919 - Peroxiredoxin, at 5,670 to 6,176
GFF2919
GFF2920 - Histone acetyltransferase HPA2 and related acetyltransferases, at 6,246 to 6,722
GFF2920
Position (kb) 5
6 Strain fitness (log2 ratio) -1
0
1 at 5.617 kb on + strand at 5.618 kb on - strand at 5.618 kb on - strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 6.069 kb on + strand, within GFF2919 at 6.069 kb on + strand, within GFF2919 at 6.070 kb on - strand, within GFF2919 at 6.070 kb on - strand, within GFF2919 at 6.073 kb on - strand, within GFF2919
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 5,617 + +0.3 5,618 - +0.0 5,618 - -0.7 5,715 + +0.1 5,715 + +0.2 5,715 + -0.3 5,715 + -0.4 5,715 + +1.7 5,715 + -0.1 5,715 + +0.0 5,715 + -0.1 5,716 - -0.6 5,716 - +0.0 5,716 - +0.1 5,716 - -1.0 5,716 - +0.2 6,069 + GFF2919 0.79 -0.6 6,069 + GFF2919 0.79 -0.6 6,070 - GFF2919 0.79 -1.1 6,070 - GFF2919 0.79 +0.0 6,073 - GFF2919 0.79 -0.6
Or see this region's nucleotide sequence