Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2634 and GFF2635 are separated by 8 nucleotides GFF2635 and GFF2636 are separated by 127 nucleotides GFF2636 and GFF2637 are separated by 126 nucleotides
GFF2634 - hypothetical protein, at 230,849 to 231,169
GFF2634
GFF2635 - Transcriptional regulator, HxlR family, at 231,178 to 231,861
GFF2635
GFF2636 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163), at 231,989 to 232,870
GFF2636
GFF2637 - FIG01210189: hypothetical protein, at 232,997 to 234,643
GFF2637
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.131 kb on + strand, within GFF2634 at 231.283 kb on + strand, within GFF2635 at 231.283 kb on + strand, within GFF2635 at 231.283 kb on + strand, within GFF2635 at 231.638 kb on + strand, within GFF2635 at 231.639 kb on - strand, within GFF2635 at 231.814 kb on + strand at 231.815 kb on - strand at 231.837 kb on + strand at 231.838 kb on - strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.852 kb on - strand at 231.852 kb on - strand at 231.896 kb on + strand at 231.897 kb on - strand at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.485 kb on - strand, within GFF2636 at 233.093 kb on + strand at 233.094 kb on - strand at 233.406 kb on - strand, within GFF2637 at 233.444 kb on + strand, within GFF2637 at 233.667 kb on - strand, within GFF2637 at 233.703 kb on - strand, within GFF2637 at 233.813 kb on + strand, within GFF2637 at 233.813 kb on + strand, within GFF2637 at 233.813 kb on + strand, within GFF2637
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 231,131 + GFF2634 0.88 -0.0 231,283 + GFF2635 0.15 +0.2 231,283 + GFF2635 0.15 +0.2 231,283 + GFF2635 0.15 +0.7 231,638 + GFF2635 0.67 -0.0 231,639 - GFF2635 0.67 +2.0 231,814 + +0.2 231,815 - +0.1 231,837 + +1.0 231,838 - -0.0 231,851 + +0.2 231,851 + -1.8 231,851 + +0.3 231,851 + -0.0 231,852 - -0.9 231,852 - -0.7 231,896 + -0.3 231,897 - -0.2 232,407 - GFF2636 0.47 +0.0 232,407 - GFF2636 0.47 +0.0 232,407 - GFF2636 0.47 -0.4 232,484 + GFF2636 0.56 -0.2 232,484 + GFF2636 0.56 -0.1 232,484 + GFF2636 0.56 +0.4 232,485 - GFF2636 0.56 -1.2 233,093 + -0.0 233,094 - +0.9 233,406 - GFF2637 0.25 -1.3 233,444 + GFF2637 0.27 +0.4 233,667 - GFF2637 0.41 -0.2 233,703 - GFF2637 0.43 -0.4 233,813 + GFF2637 0.50 +0.0 233,813 + GFF2637 0.50 +0.6 233,813 + GFF2637 0.50 +1.0
Or see this region's nucleotide sequence