Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF263

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF261 and GFF262 are separated by 78 nucleotidesGFF262 and GFF263 are separated by 16 nucleotidesGFF263 and GFF264 are separated by 90 nucleotides GFF261 - Sulfur oxidation protein SoxZ, at 275,938 to 276,249 GFF261 GFF262 - sulfur oxidation protein SoxA, at 276,328 to 277,137 GFF262 GFF263 - Sulfur oxidation protein SoxX, at 277,154 to 277,804 GFF263 GFF264 - Sulfur oxidation protein SoxB, at 277,895 to 279,619 GFF264 Position (kb) 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 276.207 kb on + strand, within GFF261at 276.207 kb on + strand, within GFF261at 276.207 kb on + strand, within GFF261at 276.208 kb on - strand, within GFF261at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.736 kb on + strand, within GFF262at 276.737 kb on - strand, within GFF262at 276.737 kb on - strand, within GFF262at 276.737 kb on - strand, within GFF262at 276.805 kb on + strand, within GFF262at 276.805 kb on + strand, within GFF262at 276.805 kb on + strand, within GFF262at 276.805 kb on + strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.806 kb on - strand, within GFF262at 276.964 kb on + strand, within GFF262at 276.965 kb on - strand, within GFF262at 277.081 kb on + strandat 277.081 kb on + strandat 277.081 kb on + strandat 277.081 kb on + strandat 277.081 kb on + strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.082 kb on - strandat 277.238 kb on + strand, within GFF263at 277.239 kb on - strand, within GFF263at 277.532 kb on + strand, within GFF263at 277.532 kb on + strand, within GFF263at 277.532 kb on + strand, within GFF263at 277.533 kb on - strand, within GFF263at 277.533 kb on - strand, within GFF263at 277.592 kb on + strand, within GFF263at 277.592 kb on + strand, within GFF263at 277.592 kb on + strand, within GFF263at 277.592 kb on + strand, within GFF263at 277.593 kb on - strand, within GFF263at 277.593 kb on - strand, within GFF263at 277.593 kb on - strand, within GFF263at 277.593 kb on - strand, within GFF263at 277.598 kb on + strand, within GFF263at 277.598 kb on + strand, within GFF263at 277.658 kb on + strand, within GFF263at 277.658 kb on + strand, within GFF263at 277.659 kb on - strand, within GFF263at 277.659 kb on - strand, within GFF263at 277.691 kb on + strand, within GFF263at 277.692 kb on - strand, within GFF263at 277.864 kb on - strandat 277.864 kb on - strandat 277.877 kb on + strandat 277.877 kb on + strandat 277.877 kb on + strandat 277.877 kb on + strandat 277.878 kb on - strandat 277.878 kb on - strandat 278.009 kb on + strandat 278.009 kb on + strandat 278.009 kb on + strandat 278.010 kb on - strandat 278.010 kb on - strandat 278.010 kb on - strandat 278.010 kb on - strandat 278.210 kb on + strand, within GFF264at 278.210 kb on + strand, within GFF264at 278.210 kb on + strand, within GFF264at 278.211 kb on - strand, within GFF264at 278.211 kb on - strand, within GFF264at 278.240 kb on + strand, within GFF264at 278.240 kb on + strand, within GFF264at 278.240 kb on + strand, within GFF264at 278.240 kb on + strand, within GFF264at 278.241 kb on - strand, within GFF264at 278.241 kb on - strand, within GFF264at 278.241 kb on - strand, within GFF264at 278.241 kb on - strand, within GFF264at 278.606 kb on + strand, within GFF264at 278.607 kb on - strand, within GFF264at 278.607 kb on - strand, within GFF264at 278.607 kb on - strand, within GFF264at 278.630 kb on + strand, within GFF264at 278.630 kb on + strand, within GFF264at 278.630 kb on + strand, within GFF264at 278.631 kb on - strand, within GFF264at 278.631 kb on - strand, within GFF264at 278.631 kb on - strand, within GFF264at 278.631 kb on - strand, within GFF264at 278.631 kb on - strand, within GFF264at 278.631 kb on - strand, within GFF264

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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276,207 + GFF261 0.86 -0.4
276,207 + GFF261 0.86 -1.9
276,207 + GFF261 0.86 -1.1
276,208 - GFF261 0.87 -1.0
276,736 + GFF262 0.50 +0.1
276,736 + GFF262 0.50 +0.0
276,736 + GFF262 0.50 +0.4
276,736 + GFF262 0.50 +0.8
276,736 + GFF262 0.50 -0.4
276,736 + GFF262 0.50 +0.6
276,736 + GFF262 0.50 +0.3
276,736 + GFF262 0.50 +0.1
276,737 - GFF262 0.50 +0.0
276,737 - GFF262 0.50 +0.2
276,737 - GFF262 0.50 +0.9
276,805 + GFF262 0.59 -0.3
276,805 + GFF262 0.59 -0.1
276,805 + GFF262 0.59 +0.0
276,805 + GFF262 0.59 +0.5
276,806 - GFF262 0.59 +0.1
276,806 - GFF262 0.59 -0.1
276,806 - GFF262 0.59 +1.4
276,806 - GFF262 0.59 +0.8
276,806 - GFF262 0.59 +0.3
276,806 - GFF262 0.59 +0.5
276,806 - GFF262 0.59 -0.1
276,806 - GFF262 0.59 +1.2
276,806 - GFF262 0.59 -0.1
276,806 - GFF262 0.59 +0.6
276,964 + GFF262 0.79 +0.3
276,965 - GFF262 0.79 +0.6
277,081 + -0.1
277,081 + +0.3
277,081 + +0.6
277,081 + -1.1
277,081 + +0.4
277,082 - +0.8
277,082 - +0.0
277,082 - -1.2
277,082 - +0.6
277,082 - +0.3
277,082 - +0.1
277,082 - +0.5
277,082 - -0.3
277,082 - +0.2
277,238 + GFF263 0.13 +0.2
277,239 - GFF263 0.13 -0.7
277,532 + GFF263 0.58 +0.1
277,532 + GFF263 0.58 -0.2
277,532 + GFF263 0.58 -0.0
277,533 - GFF263 0.58 +0.8
277,533 - GFF263 0.58 -0.7
277,592 + GFF263 0.67 -1.1
277,592 + GFF263 0.67 +0.4
277,592 + GFF263 0.67 +0.3
277,592 + GFF263 0.67 +0.5
277,593 - GFF263 0.67 -0.7
277,593 - GFF263 0.67 -0.8
277,593 - GFF263 0.67 +1.5
277,593 - GFF263 0.67 -0.2
277,598 + GFF263 0.68 -0.4
277,598 + GFF263 0.68 +0.4
277,658 + GFF263 0.77 -0.2
277,658 + GFF263 0.77 +0.9
277,659 - GFF263 0.78 +0.2
277,659 - GFF263 0.78 +0.8
277,691 + GFF263 0.82 -0.1
277,692 - GFF263 0.83 +0.4
277,864 - +0.1
277,864 - -0.5
277,877 + +0.1
277,877 + +1.2
277,877 + +1.1
277,877 + -0.4
277,878 - +0.4
277,878 - -0.2
278,009 + -0.7
278,009 + -0.3
278,009 + +0.9
278,010 - +1.3
278,010 - -0.3
278,010 - -0.3
278,010 - -0.0
278,210 + GFF264 0.18 -0.4
278,210 + GFF264 0.18 -0.4
278,210 + GFF264 0.18 +0.2
278,211 - GFF264 0.18 +0.2
278,211 - GFF264 0.18 -0.4
278,240 + GFF264 0.20 -0.1
278,240 + GFF264 0.20 -0.2
278,240 + GFF264 0.20 -1.0
278,240 + GFF264 0.20 -0.1
278,241 - GFF264 0.20 -0.8
278,241 - GFF264 0.20 -0.3
278,241 - GFF264 0.20 -0.2
278,241 - GFF264 0.20 +0.8
278,606 + GFF264 0.41 -1.3
278,607 - GFF264 0.41 +0.9
278,607 - GFF264 0.41 -2.0
278,607 - GFF264 0.41 -0.3
278,630 + GFF264 0.43 +0.1
278,630 + GFF264 0.43 -1.4
278,630 + GFF264 0.43 +0.4
278,631 - GFF264 0.43 +0.4
278,631 - GFF264 0.43 +0.1
278,631 - GFF264 0.43 +0.5
278,631 - GFF264 0.43 -0.7
278,631 - GFF264 0.43 +1.9
278,631 - GFF264 0.43 +1.2

Or see this region's nucleotide sequence