Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF254

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF252 and GFF253 are separated by 12 nucleotidesGFF253 and GFF254 are separated by 293 nucleotidesGFF254 and GFF255 are separated by 24 nucleotides GFF252 - Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-), at 268,780 to 270,057 GFF252 GFF253 - cytochrome c subunit of flavocytochrome c sulfide dehydrogenase, at 270,070 to 270,372 GFF253 GFF254 - hypothetical protein, at 270,666 to 270,878 GFF254 GFF255 - MFS permease, at 270,903 to 272,153 GFF255 Position (kb) 270 271Strain fitness (log2 ratio) -2 -1 0 1at 269.784 kb on - strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.913 kb on - strand, within GFF252at 269.936 kb on + strandat 269.936 kb on + strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.125 kb on + strand, within GFF253at 270.125 kb on + strand, within GFF253at 270.126 kb on - strand, within GFF253at 270.400 kb on + strandat 270.400 kb on + strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.465 kb on + strandat 270.465 kb on + strandat 270.466 kb on - strandat 270.466 kb on - strandat 270.479 kb on + strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.517 kb on - strandat 270.528 kb on + strandat 270.528 kb on + strandat 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.758 kb on - strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.818 kb on - strand, within GFF254at 270.818 kb on - strand, within GFF254at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.450 kb on - strand, within GFF255at 271.659 kb on + strand, within GFF255at 271.830 kb on + strand, within GFF255

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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269,784 - GFF252 0.79 +0.4
269,912 + GFF252 0.89 -0.2
269,912 + GFF252 0.89 -0.4
269,912 + GFF252 0.89 -0.1
269,912 + GFF252 0.89 -0.5
269,912 + GFF252 0.89 -0.7
269,912 + GFF252 0.89 -0.7
269,912 + GFF252 0.89 -0.6
269,913 - GFF252 0.89 -0.4
269,936 + -2.2
269,936 + -0.1
270,072 - -0.3
270,072 - -0.9
270,072 - +0.1
270,072 - +0.2
270,072 - -0.2
270,125 + GFF253 0.18 -0.2
270,125 + GFF253 0.18 -1.0
270,126 - GFF253 0.18 +0.0
270,400 + +0.1
270,400 + +0.4
270,401 - -0.7
270,401 - +0.3
270,401 - -0.4
270,401 - +1.1
270,441 + -0.2
270,441 + -0.4
270,445 + +0.1
270,445 + +0.1
270,445 + -1.2
270,446 - +0.1
270,446 - +0.1
270,446 - +0.3
270,446 - -0.2
270,446 - -0.2
270,465 + -0.3
270,465 + +0.2
270,466 - -0.8
270,466 - -0.3
270,479 + -0.6
270,480 - +0.6
270,480 - +0.3
270,480 - -0.4
270,480 - -0.3
270,517 - +0.9
270,528 + +1.6
270,528 + -0.0
270,694 + GFF254 0.13 +0.2
270,694 + GFF254 0.13 +0.5
270,694 + GFF254 0.13 +0.3
270,694 + GFF254 0.13 +0.3
270,694 + GFF254 0.13 +0.6
270,694 + GFF254 0.13 +0.2
270,694 + GFF254 0.13 +0.4
270,695 - GFF254 0.14 +0.0
270,695 - GFF254 0.14 -0.3
270,695 - GFF254 0.14 +0.5
270,695 - GFF254 0.14 -1.2
270,695 - GFF254 0.14 +0.9
270,695 - GFF254 0.14 -0.4
270,758 - GFF254 0.43 -2.1
270,817 + GFF254 0.71 +0.0
270,817 + GFF254 0.71 +0.5
270,817 + GFF254 0.71 -0.5
270,818 - GFF254 0.71 +0.2
270,818 - GFF254 0.71 +0.8
271,050 + GFF255 0.12 -0.5
271,050 + GFF255 0.12 -0.4
271,050 + GFF255 0.12 -0.2
271,050 + GFF255 0.12 -0.1
271,050 + GFF255 0.12 -0.0
271,050 + GFF255 0.12 +0.3
271,050 + GFF255 0.12 +0.1
271,050 + GFF255 0.12 -0.1
271,050 + GFF255 0.12 -0.9
271,050 + GFF255 0.12 +0.1
271,050 + GFF255 0.12 +0.1
271,050 + GFF255 0.12 +0.7
271,050 + GFF255 0.12 +0.0
271,051 - GFF255 0.12 -0.5
271,051 - GFF255 0.12 -0.7
271,051 - GFF255 0.12 +0.7
271,051 - GFF255 0.12 -0.4
271,051 - GFF255 0.12 -1.1
271,051 - GFF255 0.12 -0.1
271,051 - GFF255 0.12 +1.4
271,051 - GFF255 0.12 -0.1
271,051 - GFF255 0.12 +0.3
271,095 + GFF255 0.15 -1.0
271,095 + GFF255 0.15 +0.9
271,095 + GFF255 0.15 +0.5
271,095 + GFF255 0.15 -0.1
271,449 + GFF255 0.44 +0.4
271,449 + GFF255 0.44 +0.2
271,449 + GFF255 0.44 +0.5
271,449 + GFF255 0.44 -0.2
271,450 - GFF255 0.44 -0.8
271,659 + GFF255 0.60 +0.2
271,830 + GFF255 0.74 +0.1

Or see this region's nucleotide sequence