Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2525

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
106,514	+		GFF2524	0.39	+0.6
106,514	+		GFF2524	0.39	-0.0
106,515	-		GFF2524	0.39	+0.3
106,515	-		GFF2524	0.39	+0.5
106,515	-		GFF2524	0.39	+0.3
106,515	-		GFF2524	0.39	+0.2
106,920	-		GFF2524	0.70	-0.0
106,920	-		GFF2524	0.70	+0.5
106,927	-		GFF2524	0.70	-0.6
106,928	+		GFF2524	0.70	-0.2
106,928	+		GFF2524	0.70	-0.5
106,928	+		GFF2524	0.70	+0.3
106,928	+		GFF2524	0.70	+0.8
106,928	+		GFF2524	0.70	-0.1
106,928	+		GFF2524	0.70	+1.0
106,928	+		GFF2524	0.70	+0.1
106,928	+		GFF2524	0.70	+1.6
106,928	+		GFF2524	0.70	-0.6
106,928	+		GFF2524	0.70	-0.0
106,929	-		GFF2524	0.70	-0.8
107,195	+				+0.5
107,195	+				+0.0
107,196	-				-1.0
107,216	+				+1.5
107,216	+				-0.3
107,217	-				+2.0
107,217	-				+0.3
107,217	-				-1.0
107,217	-				+0.2
107,262	-				+0.1
107,461	+		GFF2525	0.26	+0.5
107,461	+		GFF2525	0.26	+0.1
107,462	-		GFF2525	0.26	+0.8
107,644	+		GFF2525	0.59	+0.1
107,722	+		GFF2525	0.73	+0.5
107,722	+		GFF2525	0.73	+0.5
107,722	+		GFF2525	0.73	+1.8
107,722	+		GFF2525	0.73	-0.3
107,723	-		GFF2525	0.73	+0.6
107,740	+		GFF2525	0.76	+0.2
107,957	+				-1.8
107,958	-				+0.1
108,059	+		GFF2526	0.14	+0.5
108,139	+		GFF2526	0.21	-2.1
108,140	-		GFF2526	0.21	-0.3
108,161	+		GFF2526	0.23	+1.5
108,161	+		GFF2526	0.23	+0.1
108,161	+		GFF2526	0.23	-0.2
108,161	+		GFF2526	0.23	-0.4
108,161	+		GFF2526	0.23	+1.1
108,161	+		GFF2526	0.23	-0.2
108,161	+		GFF2526	0.23	+0.7
108,161	+		GFF2526	0.23	+2.6
108,161	+		GFF2526	0.23	-1.0
108,162	-		GFF2526	0.23	+0.6
108,162	-		GFF2526	0.23	+1.0
108,162	-		GFF2526	0.23	+1.2
108,162	-		GFF2526	0.23	-0.1
108,162	-		GFF2526	0.23	-0.3
108,162	-		GFF2526	0.23	-0.5
108,162	-		GFF2526	0.23	-0.1
108,162	-		GFF2526	0.23	-0.6
108,162	-		GFF2526	0.23	+0.2
108,278	+		GFF2526	0.32	+0.2
108,279	-		GFF2526	0.32	-0.0
108,290	+		GFF2526	0.33	+0.0
108,632	+		GFF2526	0.61	+0.0
108,633	-		GFF2526	0.61	+1.1
108,633	-		GFF2526	0.61	+0.6
108,656	-		GFF2526	0.63	+0.4
108,662	+		GFF2526	0.63	-0.2
108,684	-		GFF2526	0.65	-0.1
108,694	+		GFF2526	0.66	+0.5
108,749	+		GFF2526	0.71	-0.0
108,750	-		GFF2526	0.71	-0.1
108,777	-		GFF2526	0.73	-0.3
108,777	-		GFF2526	0.73	+1.1
108,863	+		GFF2526	0.80	+0.2
108,863	+		GFF2526	0.80	+0.3
108,863	+		GFF2526	0.80	+0.4
108,864	-		GFF2526	0.80	-0.1
108,864	-		GFF2526	0.80	-0.9