Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2413 and GFF2414 are separated by 46 nucleotides GFF2414 and GFF2415 are separated by 216 nucleotides GFF2415 and GFF2416 are separated by 15 nucleotides GFF2416 and GFF2417 are separated by 644 nucleotides
GFF2413 - hypothetical protein, at 60,894 to 61,061
GFF2413
GFF2414 - hypothetical protein, at 61,108 to 61,290
GFF2414
GFF2415 - hypothetical protein, at 61,507 to 61,722
GFF2415
GFF2416 - two component, sigma54 specific, transcriptional regulator, Fis family, at 61,738 to 62,448
GFF2416
GFF2417 - response regulator receiver protein, at 63,093 to 63,479
GFF2417
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1
2
3 at 60.826 kb on + strand at 60.827 kb on - strand at 60.866 kb on - strand at 60.982 kb on - strand, within GFF2413 at 60.982 kb on - strand, within GFF2413 at 61.003 kb on + strand, within GFF2413 at 61.003 kb on + strand, within GFF2413 at 61.098 kb on - strand at 61.337 kb on - strand at 61.402 kb on + strand at 61.402 kb on + strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.418 kb on - strand at 61.461 kb on + strand at 61.462 kb on - strand at 61.462 kb on - strand at 61.462 kb on - strand at 61.760 kb on + strand at 61.760 kb on + strand at 61.760 kb on + strand at 61.760 kb on + strand at 61.761 kb on - strand at 61.899 kb on + strand, within GFF2416 at 62.007 kb on - strand, within GFF2416 at 62.031 kb on - strand, within GFF2416 at 62.152 kb on + strand, within GFF2416 at 62.153 kb on - strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.223 kb on + strand, within GFF2416 at 62.224 kb on - strand, within GFF2416 at 62.255 kb on + strand, within GFF2416 at 62.461 kb on + strand at 62.461 kb on + strand at 62.461 kb on + strand at 62.464 kb on + strand at 62.464 kb on + strand at 62.465 kb on - strand at 62.465 kb on - strand at 62.468 kb on + strand at 62.536 kb on + strand at 62.536 kb on + strand at 62.536 kb on + strand at 62.537 kb on - strand at 62.606 kb on - strand at 62.777 kb on - strand at 62.855 kb on + strand at 62.895 kb on + strand at 62.895 kb on + strand at 62.896 kb on - strand at 62.906 kb on + strand at 62.907 kb on - strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 62.972 kb on + strand at 63.056 kb on + strand at 63.056 kb on + strand at 63.057 kb on - strand at 63.106 kb on + strand at 63.106 kb on + strand at 63.106 kb on + strand at 63.107 kb on - strand at 63.107 kb on - strand at 63.107 kb on - strand at 63.399 kb on + strand, within GFF2417 at 63.399 kb on + strand, within GFF2417 at 63.400 kb on - strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.403 kb on + strand, within GFF2417 at 63.404 kb on - strand, within GFF2417 at 63.404 kb on - strand, within GFF2417 at 63.404 kb on - strand, within GFF2417
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 60,826 + +0.1 60,827 - +0.6 60,866 - -1.3 60,982 - GFF2413 0.52 -0.1 60,982 - GFF2413 0.52 +0.7 61,003 + GFF2413 0.65 -0.2 61,003 + GFF2413 0.65 -0.3 61,098 - -0.1 61,337 - -0.4 61,402 + +0.0 61,402 + -0.2 61,418 - +0.2 61,418 - -0.0 61,418 - -0.3 61,418 - +0.6 61,461 + -0.7 61,462 - +0.2 61,462 - +0.2 61,462 - -0.4 61,760 + -0.3 61,760 + -0.7 61,760 + +0.3 61,760 + -0.2 61,761 - -0.3 61,899 + GFF2416 0.23 -0.5 62,007 - GFF2416 0.38 +0.0 62,031 - GFF2416 0.41 -0.3 62,152 + GFF2416 0.58 -0.1 62,153 - GFF2416 0.58 -0.4 62,223 + GFF2416 0.68 +0.0 62,223 + GFF2416 0.68 +0.1 62,223 + GFF2416 0.68 +0.9 62,224 - GFF2416 0.68 -0.4 62,255 + GFF2416 0.73 -0.6 62,461 + +0.2 62,461 + +1.2 62,461 + +0.3 62,464 + -0.7 62,464 + +0.1 62,465 - +0.0 62,465 - -0.2 62,468 + -0.4 62,536 + +0.3 62,536 + -0.3 62,536 + +3.2 62,537 - +0.5 62,606 - +1.6 62,777 - -0.1 62,855 + +0.1 62,895 + -0.4 62,895 + +0.9 62,896 - -0.1 62,906 + -0.0 62,907 - +1.3 62,972 + -0.8 62,972 + +0.3 62,972 + +0.4 62,972 + +0.8 62,972 + +0.1 63,056 + -0.5 63,056 + +0.2 63,057 - +0.2 63,106 + -0.4 63,106 + -0.5 63,106 + +0.1 63,107 - -0.9 63,107 - -0.8 63,107 - -0.4 63,399 + GFF2417 0.79 -0.1 63,399 + GFF2417 0.79 -0.7 63,400 - GFF2417 0.79 +0.0 63,403 + GFF2417 0.80 +0.5 63,403 + GFF2417 0.80 +0.6 63,403 + GFF2417 0.80 -0.4 63,403 + GFF2417 0.80 -0.1 63,403 + GFF2417 0.80 +0.1 63,404 - GFF2417 0.80 +0.3 63,404 - GFF2417 0.80 +0.2 63,404 - GFF2417 0.80 +0.9
Or see this region's nucleotide sequence