Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2395

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2394 and GFF2395 are separated by 324 nucleotidesGFF2395 and GFF2396 overlap by 4 nucleotides GFF2394 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 37,791 to 39,617 GFF2394 GFF2395 - FOG: GGDEF domain, at 39,942 to 40,445 GFF2395 GFF2396 - hypothetical protein, at 40,442 to 40,852 GFF2396 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.126 kb on + strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.127 kb on - strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.166 kb on + strand, within GFF2394at 39.167 kb on - strand, within GFF2394at 39.170 kb on + strand, within GFF2394at 39.171 kb on - strand, within GFF2394at 39.236 kb on + strand, within GFF2394at 39.236 kb on + strand, within GFF2394at 39.237 kb on - strand, within GFF2394at 39.267 kb on + strand, within GFF2394at 39.267 kb on + strand, within GFF2394at 39.268 kb on - strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.284 kb on + strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.285 kb on - strand, within GFF2394at 39.311 kb on - strand, within GFF2394at 39.389 kb on + strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.390 kb on - strand, within GFF2394at 39.459 kb on + strandat 39.621 kb on + strandat 39.621 kb on + strandat 39.622 kb on - strandat 39.635 kb on - strandat 39.720 kb on + strandat 39.721 kb on - strandat 39.822 kb on + strandat 39.864 kb on + strandat 39.915 kb on - strandat 40.270 kb on - strand, within GFF2395at 40.270 kb on - strand, within GFF2395at 40.270 kb on - strand, within GFF2395at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.530 kb on + strand, within GFF2396at 40.531 kb on - strand, within GFF2396at 40.531 kb on - strand, within GFF2396at 40.675 kb on + strand, within GFF2396at 40.676 kb on - strand, within GFF2396at 40.676 kb on - strand, within GFF2396at 40.797 kb on + strand, within GFF2396at 40.797 kb on + strand, within GFF2396at 41.038 kb on + strandat 41.039 kb on - strandat 41.039 kb on - strandat 41.039 kb on - strandat 41.046 kb on + strandat 41.047 kb on - strandat 41.047 kb on - strandat 41.090 kb on + strandat 41.090 kb on + strandat 41.090 kb on + strandat 41.091 kb on - strandat 41.348 kb on - strandat 41.355 kb on + strandat 41.355 kb on + strandat 41.356 kb on - strandat 41.381 kb on + strandat 41.382 kb on - strandat 41.439 kb on + strandat 41.440 kb on - strandat 41.440 kb on - strandat 41.440 kb on - strandat 41.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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39,126 + GFF2394 0.73 +0.9
39,126 + GFF2394 0.73 -0.8
39,126 + GFF2394 0.73 +0.3
39,126 + GFF2394 0.73 -1.2
39,127 - GFF2394 0.73 -0.9
39,127 - GFF2394 0.73 -0.1
39,127 - GFF2394 0.73 -0.2
39,127 - GFF2394 0.73 +0.6
39,166 + GFF2394 0.75 -0.0
39,166 + GFF2394 0.75 -0.2
39,166 + GFF2394 0.75 +0.3
39,166 + GFF2394 0.75 -0.4
39,167 - GFF2394 0.75 +0.8
39,170 + GFF2394 0.75 +0.7
39,171 - GFF2394 0.76 -1.6
39,236 + GFF2394 0.79 +0.3
39,236 + GFF2394 0.79 +0.4
39,237 - GFF2394 0.79 -0.0
39,267 + GFF2394 0.81 +0.2
39,267 + GFF2394 0.81 +0.3
39,268 - GFF2394 0.81 -0.1
39,284 + GFF2394 0.82 +0.1
39,284 + GFF2394 0.82 +0.7
39,284 + GFF2394 0.82 +0.2
39,284 + GFF2394 0.82 +0.3
39,284 + GFF2394 0.82 -0.7
39,285 - GFF2394 0.82 +0.2
39,285 - GFF2394 0.82 -0.2
39,285 - GFF2394 0.82 +0.5
39,311 - GFF2394 0.83 +0.9
39,389 + GFF2394 0.87 -0.3
39,390 - GFF2394 0.88 +0.7
39,390 - GFF2394 0.88 +0.0
39,390 - GFF2394 0.88 +0.1
39,459 + -0.3
39,621 + -0.1
39,621 + +0.0
39,622 - -0.3
39,635 - -0.2
39,720 + +0.1
39,721 - -1.1
39,822 + +0.1
39,864 + +1.5
39,915 - +0.3
40,270 - GFF2395 0.65 +0.9
40,270 - GFF2395 0.65 -0.8
40,270 - GFF2395 0.65 -0.8
40,530 + GFF2396 0.21 +0.5
40,530 + GFF2396 0.21 -0.3
40,530 + GFF2396 0.21 -0.6
40,530 + GFF2396 0.21 -0.4
40,531 - GFF2396 0.22 +0.0
40,531 - GFF2396 0.22 +1.6
40,675 + GFF2396 0.57 +0.3
40,676 - GFF2396 0.57 +0.1
40,676 - GFF2396 0.57 -0.6
40,797 + GFF2396 0.86 +0.2
40,797 + GFF2396 0.86 -0.3
41,038 + -1.7
41,039 - +0.9
41,039 - +0.2
41,039 - +0.0
41,046 + +0.9
41,047 - -0.7
41,047 - +1.2
41,090 + +0.7
41,090 + -0.7
41,090 + -0.6
41,091 - -0.4
41,348 - +1.1
41,355 + -0.4
41,355 + +0.5
41,356 - +0.7
41,381 + +0.2
41,382 - -0.8
41,439 + -0.4
41,440 - -2.0
41,440 - +0.3
41,440 - -0.2
41,440 - +0.1

Or see this region's nucleotide sequence