Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2327

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
1,211,191	+		GFF2326	0.29	+1.0
1,211,258	-		GFF2326	0.36	+0.2
1,211,258	-		GFF2326	0.36	+0.6
1,211,278	+		GFF2326	0.38	+1.0
1,211,278	+		GFF2326	0.38	+0.1
1,211,335	+		GFF2326	0.43	+0.7
1,211,393	-		GFF2326	0.49	-0.3
1,211,393	-		GFF2326	0.49	-0.4
1,211,599	+		GFF2326	0.70	-0.7
1,211,600	-		GFF2326	0.70	+0.9
1,211,767	+		GFF2326	0.87	+0.2
1,211,768	-		GFF2326	0.87	-0.8
1,211,907	+				-0.2
1,211,907	+				+0.3
1,211,907	+				+0.2
1,212,230	+		GFF2327	0.29	-1.3
1,212,231	-		GFF2327	0.29	+0.6
1,212,231	-		GFF2327	0.29	+0.2
1,213,159	-		GFF2328	0.37	+0.1
1,213,290	+		GFF2328	0.64	+0.7
1,213,290	+		GFF2328	0.64	-0.2
1,213,291	-		GFF2328	0.65	-0.2
1,213,456	-				+0.3
1,213,456	-				-1.0
1,213,706	-		GFF2329	0.20	-0.2
1,213,717	+		GFF2329	0.20	+0.8
1,213,718	-		GFF2329	0.20	-0.1
1,213,718	-		GFF2329	0.20	-1.2
1,213,945	+		GFF2329	0.38	+0.1