Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF221 and GFF222 are separated by 78 nucleotides GFF222 and GFF223 are separated by 49 nucleotides GFF223 and GFF224 are separated by 21 nucleotides
GFF221 - YpfJ protein, zinc metalloprotease superfamily, at 242,298 to 243,200
GFF221
GFF222 - ATP-dependent RNA helicase Bcep18194_A5658, at 243,279 to 244,769
GFF222
GFF223 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 244,819 to 245,643
GFF223
GFF224 - Magnesium and cobalt efflux protein CorC, at 245,665 to 246,984
GFF224
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 242.724 kb on + strand, within GFF221 at 242.725 kb on - strand, within GFF221 at 242.748 kb on + strand, within GFF221 at 242.748 kb on + strand, within GFF221 at 242.749 kb on - strand, within GFF221 at 242.766 kb on + strand, within GFF221 at 242.766 kb on + strand, within GFF221 at 242.817 kb on + strand, within GFF221 at 242.818 kb on - strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.913 kb on + strand, within GFF221 at 242.914 kb on - strand, within GFF221 at 242.914 kb on - strand, within GFF221 at 243.182 kb on - strand at 243.257 kb on + strand at 243.257 kb on + strand at 243.257 kb on + strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.258 kb on - strand at 243.265 kb on + strand at 243.582 kb on + strand, within GFF222 at 243.744 kb on + strand, within GFF222 at 243.816 kb on + strand, within GFF222 at 244.275 kb on + strand, within GFF222 at 244.617 kb on + strand, within GFF222 at 245.194 kb on + strand, within GFF223 at 245.195 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.558 kb on + strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.645 kb on + strand at 245.645 kb on + strand at 245.646 kb on + strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 242,724 + GFF221 0.47 -0.6 242,725 - GFF221 0.47 -0.1 242,748 + GFF221 0.50 -0.4 242,748 + GFF221 0.50 +0.3 242,749 - GFF221 0.50 -0.8 242,766 + GFF221 0.52 +0.6 242,766 + GFF221 0.52 -0.7 242,817 + GFF221 0.57 +0.9 242,818 - GFF221 0.58 +0.5 242,913 + GFF221 0.68 +0.3 242,913 + GFF221 0.68 -0.9 242,913 + GFF221 0.68 -0.7 242,914 - GFF221 0.68 +1.2 242,914 - GFF221 0.68 -0.0 243,182 - -0.4 243,257 + -0.2 243,257 + -0.3 243,257 + +0.9 243,258 - -1.3 243,258 - -0.8 243,258 - +0.2 243,258 - -0.6 243,258 - -0.5 243,258 - -0.4 243,258 - +0.3 243,265 + +0.7 243,582 + GFF222 0.20 -0.7 243,744 + GFF222 0.31 -1.1 243,816 + GFF222 0.36 -1.8 244,275 + GFF222 0.67 +0.6 244,617 + GFF222 0.90 -2.4 245,194 + GFF223 0.45 +0.0 245,195 + GFF223 0.46 -0.0 245,305 + GFF223 0.59 -0.4 245,305 + GFF223 0.59 -0.1 245,305 + GFF223 0.59 +0.2 245,306 - GFF223 0.59 -0.7 245,306 - GFF223 0.59 +0.6 245,306 - GFF223 0.59 +0.3 245,306 - GFF223 0.59 +0.0 245,306 - GFF223 0.59 +0.2 245,306 - GFF223 0.59 -0.6 245,558 + GFF223 0.90 +0.2 245,559 - GFF223 0.90 -0.4 245,559 - GFF223 0.90 +0.2 245,559 - GFF223 0.90 -0.1 245,559 - GFF223 0.90 +2.5 245,645 + -1.1 245,645 + +0.2 245,646 + -0.2 245,646 - +0.5 245,646 - -0.7 245,646 - +0.1 245,664 + +0.4
Or see this region's nucleotide sequence