Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2038

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2037 and GFF2038 are separated by 61 nucleotidesGFF2038 and GFF2039 are separated by 21 nucleotidesGFF2039 and GFF2040 are separated by 27 nucleotides GFF2037 - glutamine synthetase family protein, at 918,261 to 919,628 GFF2037 GFF2038 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94), at 919,690 to 920,499 GFF2038 GFF2039 - hypothetical protein, at 920,521 to 920,685 GFF2039 GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212 GFF2040 Position (kb) 919 920 921Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 918.694 kb on + strand, within GFF2037at 918.694 kb on + strand, within GFF2037at 918.695 kb on - strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.727 kb on + strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.728 kb on - strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.748 kb on + strand, within GFF2037at 918.749 kb on - strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.754 kb on + strand, within GFF2037at 918.755 kb on - strand, within GFF2037at 918.755 kb on - strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.886 kb on + strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 918.887 kb on - strand, within GFF2037at 919.045 kb on + strand, within GFF2037at 919.046 kb on - strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.051 kb on + strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.052 kb on - strand, within GFF2037at 919.099 kb on + strand, within GFF2037at 919.100 kb on - strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.186 kb on + strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.187 kb on - strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.411 kb on + strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.412 kb on - strand, within GFF2037at 919.642 kb on + strandat 919.642 kb on + strandat 919.642 kb on + strandat 919.642 kb on + strandat 919.643 kb on - strandat 919.794 kb on - strand, within GFF2038at 920.033 kb on + strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.788 kb on + strandat 920.929 kb on + strand, within GFF2040at 920.930 kb on - strand, within GFF2040at 920.930 kb on - strand, within GFF2040at 921.190 kb on + strand, within GFF2040at 921.208 kb on + strand, within GFF2040at 921.208 kb on + strand, within GFF2040at 921.209 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.391 kb on + strand, within GFF2040at 921.392 kb on - strand, within GFF2040

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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918,694 + GFF2037 0.32 -1.3
918,694 + GFF2037 0.32 -0.2
918,695 - GFF2037 0.32 -0.6
918,727 + GFF2037 0.34 +1.5
918,727 + GFF2037 0.34 -1.4
918,727 + GFF2037 0.34 -0.4
918,728 - GFF2037 0.34 -0.6
918,728 - GFF2037 0.34 -2.2
918,728 - GFF2037 0.34 -2.0
918,748 + GFF2037 0.36 -1.6
918,748 + GFF2037 0.36 -0.2
918,748 + GFF2037 0.36 -0.3
918,749 - GFF2037 0.36 -0.6
918,754 + GFF2037 0.36 -0.0
918,754 + GFF2037 0.36 -0.2
918,754 + GFF2037 0.36 -0.3
918,754 + GFF2037 0.36 -1.3
918,755 - GFF2037 0.36 -2.0
918,755 - GFF2037 0.36 -0.9
918,886 + GFF2037 0.46 +0.7
918,886 + GFF2037 0.46 -0.8
918,886 + GFF2037 0.46 -1.3
918,886 + GFF2037 0.46 +0.4
918,886 + GFF2037 0.46 -1.2
918,886 + GFF2037 0.46 -1.3
918,886 + GFF2037 0.46 -0.2
918,886 + GFF2037 0.46 -0.9
918,886 + GFF2037 0.46 -1.0
918,886 + GFF2037 0.46 -0.6
918,886 + GFF2037 0.46 +1.3
918,887 - GFF2037 0.46 -0.9
918,887 - GFF2037 0.46 -0.4
918,887 - GFF2037 0.46 -0.9
918,887 - GFF2037 0.46 -1.1
918,887 - GFF2037 0.46 -0.7
918,887 - GFF2037 0.46 -0.3
918,887 - GFF2037 0.46 -1.5
918,887 - GFF2037 0.46 -0.6
918,887 - GFF2037 0.46 -1.0
918,887 - GFF2037 0.46 -0.0
918,887 - GFF2037 0.46 -0.9
918,887 - GFF2037 0.46 -0.4
919,045 + GFF2037 0.57 -0.6
919,046 - GFF2037 0.57 -0.1
919,051 + GFF2037 0.58 -0.8
919,051 + GFF2037 0.58 -0.0
919,051 + GFF2037 0.58 -1.0
919,051 + GFF2037 0.58 -0.2
919,052 - GFF2037 0.58 -0.4
919,052 - GFF2037 0.58 -0.1
919,052 - GFF2037 0.58 -0.3
919,099 + GFF2037 0.61 -1.0
919,100 - GFF2037 0.61 -0.6
919,186 + GFF2037 0.68 -0.3
919,186 + GFF2037 0.68 -0.5
919,186 + GFF2037 0.68 -1.8
919,186 + GFF2037 0.68 -0.8
919,186 + GFF2037 0.68 -0.9
919,186 + GFF2037 0.68 -1.0
919,187 - GFF2037 0.68 -1.0
919,187 - GFF2037 0.68 -0.3
919,187 - GFF2037 0.68 +0.7
919,187 - GFF2037 0.68 +1.0
919,187 - GFF2037 0.68 -1.6
919,187 - GFF2037 0.68 -0.8
919,411 + GFF2037 0.84 -1.1
919,411 + GFF2037 0.84 -0.7
919,411 + GFF2037 0.84 +2.6
919,411 + GFF2037 0.84 -0.8
919,411 + GFF2037 0.84 +0.1
919,412 - GFF2037 0.84 -0.2
919,412 - GFF2037 0.84 +1.0
919,412 - GFF2037 0.84 +2.3
919,412 - GFF2037 0.84 -0.8
919,412 - GFF2037 0.84 -0.9
919,642 + -0.1
919,642 + -0.6
919,642 + -1.3
919,642 + -1.2
919,643 - -1.7
919,794 - GFF2038 0.13 +5.7
920,033 + GFF2038 0.42 +3.3
920,403 - GFF2038 0.88 +3.0
920,403 - GFF2038 0.88 +2.9
920,403 - GFF2038 0.88 +5.3
920,571 + GFF2039 0.30 +0.1
920,571 + GFF2039 0.30 +1.3
920,571 + GFF2039 0.30 -0.3
920,572 - GFF2039 0.31 +0.2
920,572 - GFF2039 0.31 -0.5
920,572 - GFF2039 0.31 -0.1
920,712 + +0.9
920,712 + +0.4
920,712 + +0.7
920,712 + +0.4
920,712 + +0.3
920,713 - -0.0
920,713 - -1.3
920,713 - -0.7
920,713 - -0.0
920,713 - +0.2
920,713 - -0.5
920,713 - -0.3
920,713 - -0.4
920,713 - -0.5
920,713 - +0.3
920,713 - +1.0
920,713 - -0.9
920,713 - -0.5
920,713 - -0.2
920,788 + +0.2
920,929 + GFF2040 0.14 +1.0
920,930 - GFF2040 0.14 +1.0
920,930 - GFF2040 0.14 +0.4
921,190 + GFF2040 0.32 -0.9
921,208 + GFF2040 0.33 -0.5
921,208 + GFF2040 0.33 -0.7
921,209 - GFF2040 0.33 -0.2
921,257 - GFF2040 0.36 +0.1
921,257 - GFF2040 0.36 -0.6
921,391 + GFF2040 0.45 +0.2
921,392 - GFF2040 0.45 -0.2

Or see this region's nucleotide sequence