Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2002

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2001 and GFF2002 are separated by 103 nucleotidesGFF2002 and GFF2003 are separated by 12 nucleotidesGFF2003 and GFF2004 are separated by 74 nucleotidesGFF2004 and GFF2005 are separated by 2 nucleotides GFF2001 - hypothetical protein, at 878,121 to 879,380 GFF2001 GFF2002 - uncharacterized domain 1, at 879,484 to 879,906 GFF2002 GFF2003 - hypothetical protein, at 879,919 to 880,296 GFF2003 GFF2004 - hypothetical protein, at 880,371 to 880,721 GFF2004 GFF2005 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 880,724 to 881,290 GFF2005 Position (kb) 879 880Strain fitness (log2 ratio) -2 -1 0 1 2at 878.929 kb on + strand, within GFF2001at 878.929 kb on + strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 879.432 kb on + strandat 879.432 kb on + strandat 879.433 kb on - strandat 879.433 kb on - strandat 879.433 kb on - strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.455 kb on - strandat 879.455 kb on - strandat 879.455 kb on - strandat 879.469 kb on + strandat 879.634 kb on + strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.904 kb on + strandat 879.905 kb on - strandat 879.920 kb on + strandat 879.989 kb on + strand, within GFF2003at 879.989 kb on + strand, within GFF2003at 879.989 kb on + strand, within GFF2003at 879.990 kb on - strand, within GFF2003at 879.990 kb on - strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.328 kb on + strandat 880.328 kb on + strandat 880.329 kb on - strandat 880.507 kb on + strand, within GFF2004at 880.507 kb on + strand, within GFF2004at 880.507 kb on + strand, within GFF2004at 880.508 kb on - strand, within GFF2004at 880.508 kb on - strand, within GFF2004at 880.508 kb on - strand, within GFF2004at 880.508 kb on - strand, within GFF2004at 880.555 kb on + strand, within GFF2004at 880.555 kb on + strand, within GFF2004at 880.600 kb on + strand, within GFF2004at 880.600 kb on + strand, within GFF2004at 880.601 kb on - strand, within GFF2004at 880.765 kb on - strandat 880.765 kb on - strandat 880.839 kb on + strand, within GFF2005at 880.840 kb on - strand, within GFF2005at 880.840 kb on - strand, within GFF2005

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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878,929 + GFF2001 0.64 +0.6
878,929 + GFF2001 0.64 -0.1
878,930 - GFF2001 0.64 +0.8
878,930 - GFF2001 0.64 -0.1
878,930 - GFF2001 0.64 +0.3
878,959 + GFF2001 0.67 -0.3
878,959 + GFF2001 0.67 +0.7
878,959 + GFF2001 0.67 -0.4
878,960 - GFF2001 0.67 +0.5
878,960 - GFF2001 0.67 +0.1
878,960 - GFF2001 0.67 -0.2
879,432 + +0.4
879,432 + -0.4
879,433 - +0.1
879,433 - +0.0
879,433 - -0.5
879,452 + +0.1
879,452 + +0.4
879,452 + -0.6
879,452 + -0.2
879,452 + -0.3
879,453 - +1.0
879,453 - +0.1
879,453 - -1.3
879,453 - -0.0
879,453 - +0.1
879,453 - +0.2
879,453 - +0.3
879,453 - -0.2
879,453 - -0.3
879,453 - -0.2
879,454 + +0.2
879,454 + +1.0
879,454 + -0.4
879,454 + -1.1
879,454 + -0.3
879,454 + +0.2
879,454 + +1.1
879,454 + +0.0
879,455 - -0.4
879,455 - -0.6
879,455 - +0.1
879,469 + -0.7
879,634 + GFF2002 0.35 +0.1
879,635 - GFF2002 0.36 -0.4
879,635 - GFF2002 0.36 -1.0
879,635 - GFF2002 0.36 -0.2
879,701 - GFF2002 0.51 +0.2
879,701 - GFF2002 0.51 +0.2
879,701 - GFF2002 0.51 -0.5
879,904 + -0.9
879,905 - -0.6
879,920 + +1.0
879,989 + GFF2003 0.19 -1.0
879,989 + GFF2003 0.19 +0.0
879,989 + GFF2003 0.19 +0.8
879,990 - GFF2003 0.19 +1.6
879,990 - GFF2003 0.19 +0.3
880,085 + GFF2003 0.44 -0.2
880,085 + GFF2003 0.44 +0.6
880,085 + GFF2003 0.44 -1.0
880,085 + GFF2003 0.44 +0.4
880,086 - GFF2003 0.44 +0.4
880,086 - GFF2003 0.44 +0.3
880,086 - GFF2003 0.44 +0.2
880,086 - GFF2003 0.44 -0.1
880,086 - GFF2003 0.44 +0.0
880,086 - GFF2003 0.44 +0.2
880,151 + GFF2003 0.61 -0.8
880,151 + GFF2003 0.61 +0.8
880,151 + GFF2003 0.61 +1.0
880,151 + GFF2003 0.61 -0.1
880,151 + GFF2003 0.61 +0.5
880,152 - GFF2003 0.62 -0.2
880,152 - GFF2003 0.62 -0.3
880,152 - GFF2003 0.62 +0.2
880,152 - GFF2003 0.62 -0.5
880,328 + -0.1
880,328 + +1.0
880,329 - +0.7
880,507 + GFF2004 0.39 +0.7
880,507 + GFF2004 0.39 -0.7
880,507 + GFF2004 0.39 +0.6
880,508 - GFF2004 0.39 -0.0
880,508 - GFF2004 0.39 -2.2
880,508 - GFF2004 0.39 +1.3
880,508 - GFF2004 0.39 +0.0
880,555 + GFF2004 0.52 +0.1
880,555 + GFF2004 0.52 +0.4
880,600 + GFF2004 0.65 +0.0
880,600 + GFF2004 0.65 +2.0
880,601 - GFF2004 0.66 -0.6
880,765 - +1.0
880,765 - +0.4
880,839 + GFF2005 0.20 -0.7
880,840 - GFF2005 0.20 +0.6
880,840 - GFF2005 0.20 +0.5

Or see this region's nucleotide sequence