Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1999

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1998 and GFF1999 are separated by 10 nucleotidesGFF1999 and GFF2000 are separated by 209 nucleotides GFF1998 - Fumarylacetoacetase (EC 3.7.1.2), at 874,578 to 875,900 GFF1998 GFF1999 - Membrane protein TerC, possibly involved in tellurium resistance, at 875,911 to 876,606 GFF1999 GFF2000 - Uracil permease, at 876,816 to 878,117 GFF2000 Position (kb) 875 876 877Strain fitness (log2 ratio) -2 -1 0 1 2at 874.986 kb on + strand, within GFF1998at 874.986 kb on + strand, within GFF1998at 874.986 kb on + strand, within GFF1998at 874.987 kb on - strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.998 kb on + strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 874.999 kb on - strand, within GFF1998at 875.088 kb on + strand, within GFF1998at 875.088 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.181 kb on + strand, within GFF1998at 875.182 kb on - strand, within GFF1998at 875.205 kb on + strand, within GFF1998at 875.205 kb on + strand, within GFF1998at 875.206 kb on - strand, within GFF1998at 875.206 kb on - strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.226 kb on + strand, within GFF1998at 875.227 kb on - strand, within GFF1998at 875.475 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.607 kb on + strand, within GFF1998at 875.608 kb on - strand, within GFF1998at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.629 kb on + strandat 876.647 kb on + strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.687 kb on - strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.716 kb on - strandat 876.716 kb on - strandat 876.724 kb on + strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 877.059 kb on + strand, within GFF2000at 877.059 kb on + strand, within GFF2000at 877.059 kb on + strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.440 kb on + strand, within GFF2000at 877.441 kb on - strand, within GFF2000

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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874,986 + GFF1998 0.31 -0.3
874,986 + GFF1998 0.31 -0.1
874,986 + GFF1998 0.31 -0.1
874,987 - GFF1998 0.31 +0.8
874,998 + GFF1998 0.32 +0.5
874,998 + GFF1998 0.32 +0.0
874,998 + GFF1998 0.32 +0.3
874,998 + GFF1998 0.32 -1.0
874,998 + GFF1998 0.32 +0.4
874,999 - GFF1998 0.32 -0.1
874,999 - GFF1998 0.32 +0.0
874,999 - GFF1998 0.32 -1.3
875,088 + GFF1998 0.39 +0.2
875,088 + GFF1998 0.39 +0.0
875,181 + GFF1998 0.46 -0.2
875,181 + GFF1998 0.46 +1.8
875,181 + GFF1998 0.46 +0.1
875,182 - GFF1998 0.46 -0.2
875,205 + GFF1998 0.47 -1.0
875,205 + GFF1998 0.47 -0.2
875,206 - GFF1998 0.47 -1.0
875,206 - GFF1998 0.47 -0.9
875,226 + GFF1998 0.49 -0.2
875,226 + GFF1998 0.49 -1.0
875,226 + GFF1998 0.49 +1.4
875,227 - GFF1998 0.49 -0.5
875,475 + GFF1998 0.68 +1.8
875,607 + GFF1998 0.78 +0.4
875,607 + GFF1998 0.78 +0.5
875,607 + GFF1998 0.78 -0.9
875,607 + GFF1998 0.78 -0.6
875,608 - GFF1998 0.78 +0.1
876,002 + GFF1999 0.13 +0.7
876,002 + GFF1999 0.13 +0.7
876,002 + GFF1999 0.13 -0.0
876,002 + GFF1999 0.13 +0.4
876,003 - GFF1999 0.13 -1.0
876,003 - GFF1999 0.13 -0.3
876,003 - GFF1999 0.13 +1.9
876,003 - GFF1999 0.13 -0.8
876,003 - GFF1999 0.13 -0.8
876,029 + GFF1999 0.17 +0.2
876,029 + GFF1999 0.17 +0.3
876,029 + GFF1999 0.17 +0.0
876,029 + GFF1999 0.17 +0.6
876,029 + GFF1999 0.17 +0.2
876,029 + GFF1999 0.17 -0.2
876,030 - GFF1999 0.17 +0.2
876,030 - GFF1999 0.17 +0.0
876,030 - GFF1999 0.17 +0.3
876,030 - GFF1999 0.17 +0.4
876,030 - GFF1999 0.17 -0.4
876,030 - GFF1999 0.17 +0.4
876,030 - GFF1999 0.17 -0.1
876,030 - GFF1999 0.17 +0.4
876,348 - GFF1999 0.63 -0.0
876,348 - GFF1999 0.63 +0.3
876,629 + -0.6
876,647 + -0.0
876,648 - +0.3
876,648 - +0.1
876,648 - -0.1
876,648 - +0.7
876,648 - -0.0
876,648 - -0.1
876,648 - -0.7
876,648 - -0.6
876,648 - +0.7
876,687 - +0.7
876,715 + -0.3
876,715 + -1.8
876,715 + +0.1
876,715 + +1.5
876,716 - +0.6
876,716 - -0.3
876,724 + -0.1
876,725 - +1.0
876,725 - +0.3
876,725 - +0.4
876,725 - +0.2
876,725 - +0.6
876,725 - +0.7
877,059 + GFF2000 0.19 +1.2
877,059 + GFF2000 0.19 +0.1
877,059 + GFF2000 0.19 -0.7
877,060 - GFF2000 0.19 +1.0
877,060 - GFF2000 0.19 +0.8
877,060 - GFF2000 0.19 +0.3
877,060 - GFF2000 0.19 +0.1
877,179 + GFF2000 0.28 +0.4
877,179 + GFF2000 0.28 +0.1
877,179 + GFF2000 0.28 -0.2
877,179 + GFF2000 0.28 +1.4
877,180 - GFF2000 0.28 +1.5
877,180 - GFF2000 0.28 +0.6
877,180 - GFF2000 0.28 +0.2
877,180 - GFF2000 0.28 +0.3
877,440 + GFF2000 0.48 +0.1
877,441 - GFF2000 0.48 -0.4

Or see this region's nucleotide sequence