Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1947 and GFF1948 are separated by 135 nucleotides GFF1948 and GFF1949 overlap by 4 nucleotides
GFF1947 - Cyanate ABC transporter, substrate binding protein, at 819,889 to 821,310
GFF1947
GFF1948 - Transcriptional regulatory protein UhpA, at 821,446 to 822,129
GFF1948
GFF1949 - Sensory box histidine kinase, at 822,126 to 823,340
GFF1949
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.592 kb on + strand, within GFF1947 at 820.592 kb on + strand, within GFF1947 at 820.593 kb on - strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.595 kb on + strand, within GFF1947 at 820.623 kb on - strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.811 kb on + strand, within GFF1947 at 820.812 kb on - strand, within GFF1947 at 820.893 kb on - strand, within GFF1947 at 821.151 kb on - strand, within GFF1947 at 821.288 kb on + strand at 821.288 kb on + strand at 821.288 kb on + strand at 821.431 kb on - strand at 821.540 kb on + strand, within GFF1948 at 821.628 kb on - strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.838 kb on - strand, within GFF1948 at 822.256 kb on + strand, within GFF1949 at 823.011 kb on - strand, within GFF1949
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 820,592 + GFF1947 0.49 -0.6 820,592 + GFF1947 0.49 -1.0 820,593 - GFF1947 0.50 -0.8 820,595 + GFF1947 0.50 -0.6 820,595 + GFF1947 0.50 -0.2 820,623 - GFF1947 0.52 +0.3 820,811 + GFF1947 0.65 +2.0 820,811 + GFF1947 0.65 +0.5 820,812 - GFF1947 0.65 -1.6 820,893 - GFF1947 0.71 -0.3 821,151 - GFF1947 0.89 -1.0 821,288 + -0.1 821,288 + -0.2 821,288 + +0.2 821,431 - +0.2 821,540 + GFF1948 0.14 +0.3 821,628 - GFF1948 0.27 +0.2 821,786 + GFF1948 0.50 -0.4 821,786 + GFF1948 0.50 -1.0 821,822 + GFF1948 0.55 -0.1 821,822 + GFF1948 0.55 -2.6 821,822 + GFF1948 0.55 +0.0 821,823 - GFF1948 0.55 +0.5 821,823 - GFF1948 0.55 +0.2 821,823 - GFF1948 0.55 +0.2 821,837 + GFF1948 0.57 +0.2 821,837 + GFF1948 0.57 +0.5 821,838 - GFF1948 0.57 +0.0 822,256 + GFF1949 0.11 -0.1 823,011 - GFF1949 0.73 -0.2
Or see this region's nucleotide sequence