Experiment: Ying_AminoAcid20 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1930 and GFF1931 are separated by 99 nucleotides GFF1931 and GFF1932 are separated by 36 nucleotides GFF1932 and GFF1933 overlap by 4 nucleotides
GFF1930 - Transcriptional regulatory protein zraR, at 804,846 to 806,411
GFF1930
GFF1931 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 806,511 to 807,497
GFF1931
GFF1932 - Bll5738 protein, at 807,534 to 808,109
GFF1932
GFF1933 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 808,106 to 809,257
GFF1933
Position (kb) 806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 805.956 kb on + strand, within GFF1930 at 805.956 kb on + strand, within GFF1930 at 805.956 kb on + strand, within GFF1930 at 805.956 kb on + strand, within GFF1930 at 805.956 kb on + strand, within GFF1930 at 805.957 kb on - strand, within GFF1930 at 805.957 kb on - strand, within GFF1930 at 805.957 kb on - strand, within GFF1930 at 805.959 kb on + strand, within GFF1930 at 805.960 kb on - strand, within GFF1930 at 806.268 kb on + strand at 806.754 kb on + strand, within GFF1931 at 806.754 kb on + strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.755 kb on - strand, within GFF1931 at 806.856 kb on + strand, within GFF1931 at 806.856 kb on + strand, within GFF1931 at 806.901 kb on + strand, within GFF1931 at 806.905 kb on - strand, within GFF1931 at 807.148 kb on - strand, within GFF1931 at 807.148 kb on - strand, within GFF1931 at 807.208 kb on - strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.309 kb on + strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.310 kb on - strand, within GFF1931 at 807.315 kb on + strand, within GFF1931 at 807.316 kb on - strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.390 kb on + strand, within GFF1931 at 807.391 kb on + strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.391 kb on - strand, within GFF1931 at 807.588 kb on + strand at 807.588 kb on + strand at 807.696 kb on + strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.045 kb on - strand, within GFF1932 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3 remove 805,956 + GFF1930 0.71 +1.0 805,956 + GFF1930 0.71 +0.9 805,956 + GFF1930 0.71 +0.1 805,956 + GFF1930 0.71 +0.2 805,956 + GFF1930 0.71 -0.3 805,957 - GFF1930 0.71 +0.3 805,957 - GFF1930 0.71 +0.6 805,957 - GFF1930 0.71 +0.2 805,959 + GFF1930 0.71 +0.1 805,960 - GFF1930 0.71 -0.1 806,268 + -0.2 806,754 + GFF1931 0.25 +0.4 806,754 + GFF1931 0.25 +0.4 806,755 - GFF1931 0.25 -1.0 806,755 - GFF1931 0.25 -0.9 806,755 - GFF1931 0.25 -0.3 806,755 - GFF1931 0.25 +0.8 806,755 - GFF1931 0.25 +0.0 806,856 + GFF1931 0.35 -0.4 806,856 + GFF1931 0.35 +0.6 806,901 + GFF1931 0.40 +0.0 806,905 - GFF1931 0.40 -0.4 807,148 - GFF1931 0.65 -0.0 807,148 - GFF1931 0.65 -0.8 807,208 - GFF1931 0.71 -0.1 807,309 + GFF1931 0.81 +0.4 807,309 + GFF1931 0.81 +0.4 807,310 - GFF1931 0.81 -0.3 807,310 - GFF1931 0.81 -1.3 807,310 - GFF1931 0.81 -3.2 807,315 + GFF1931 0.81 -1.7 807,316 - GFF1931 0.82 -0.1 807,390 + GFF1931 0.89 -0.6 807,390 + GFF1931 0.89 -0.3 807,390 + GFF1931 0.89 +0.6 807,390 + GFF1931 0.89 -0.3 807,390 + GFF1931 0.89 +0.3 807,390 + GFF1931 0.89 +0.7 807,391 + GFF1931 0.89 -0.1 807,391 - GFF1931 0.89 -0.4 807,391 - GFF1931 0.89 +0.0 807,391 - GFF1931 0.89 -0.2 807,588 + +0.1 807,588 + +1.0 807,696 + GFF1932 0.28 +0.0 808,045 - GFF1932 0.89 +0.4 808,045 - GFF1932 0.89 +0.9 808,406 + GFF1933 0.26 -1.0 808,406 + GFF1933 0.26 +0.0 808,406 + GFF1933 0.26 +0.1 808,406 + GFF1933 0.26 -0.4 808,407 - GFF1933 0.26 +0.0 808,407 - GFF1933 0.26 -0.8 808,407 - GFF1933 0.26 -0.1 808,407 - GFF1933 0.26 -1.6 808,407 - GFF1933 0.26 +0.6 808,407 - GFF1933 0.26 +1.4
Or see this region's nucleotide sequence